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  5. Ppi_g05106

Ppi_g05106 (PUB25)


Aliases : PUB25

Description : not classified & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g05106

Target Alias Description ECC score Gene Family Method Actions
Als_g62359 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15171.t1 PUB29, ATPUB29,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19337.t1 PUB26, Aspi01Gene19337 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G047700.1 PUB8, B80,... E3 ubiquitin ligase *(PUB8) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g29374 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03660 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11880 CMPG1, ATCMPG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_33190g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_481299g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g10378 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717 PUB26 not classified & original description: CDS=1-1404 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015794 PUB26 U-Box-group-III E3 ubiquitin ligase & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 5 76
No external refs found!