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  5. Ppi_g04707

Ppi_g04707


Description : component *(SF3B3) of splicing factor 3B complex & original description: none


Gene families : OG0007395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g04707

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00171130 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Adi_g013155 No alias component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Ala_g02677 No alias component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Als_g03253 No alias component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Cba_g04093 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Ceric.26G015800.1 Ceric.26G015800 component *(SF3B3) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Cre08.g372800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g16717 No alias component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g03168 No alias component *(SF3B3) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
GSVIVT01005970001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_38044 No alias component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g04480.1 LOC_Os02g04480 component SF3B3 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Lfl_g36606 No alias component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
MA_10430596g0010 No alias component SF3B3 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Pir_g12238 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015973 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Smo171237 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Solyc04g010260.3.1 Solyc04g010260 component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Tin_g06130 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e013611_P001 Zm00001e013611 component SF3B3 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018846 Cleavage/polyA-sp_fac_asu_N 75 589
IPR004871 Cleavage/polyA-sp_fac_asu_C 851 1170
No external refs found!