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  5. Ppi_g04685

Ppi_g04685 (TOP1BETA, TOP1)


Aliases : TOP1BETA, TOP1

Description : DNA topoisomerase *(TOP1) & original description: none


Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g04685

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00193620 MGO1, TOP1,... Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.02 OrthoFinder output from all 47 species
AT5G55310 TOP1BETA, TOP1 DNA topoisomerase 1 beta 0.02 OrthoFinder output from all 47 species
Adi_g087257 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G042500.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g04011 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25112 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29614 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39972 No alias DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g049720.4.1 MGO1, TOP1,... DNA topoisomerase (TOP1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004402 histone acetyltransferase activity IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR008336 TopoI_DNA-bd_euk 458 669
IPR013500 TopoI_cat_euk 672 894
IPR025834 TopoI_C_dom 932 1000
No external refs found!