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  5. Ppi_g04623

Ppi_g04623


Description : component *(Sec23) of Sec23/24 cargo adaptor subcomplex & original description: none


Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g04623

Target Alias Description ECC score Gene Family Method Actions
AT1G05520 No alias Sec23/Sec24 protein transport family protein 0.04 OrthoFinder output from all 47 species
AT3G23660 No alias Sec23/Sec24 protein transport family protein 0.03 OrthoFinder output from all 47 species
Als_g14171 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.03 OrthoFinder output from all 47 species
Aop_g18354 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.03 OrthoFinder output from all 47 species
Azfi_s0118.g046613 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.05 OrthoFinder output from all 47 species
Ceric.01G119200.1 Ceric.01G119200 component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.15 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Dcu_g08281 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
GSVIVT01026719001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder output from all 47 species
Gb_05558 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species
LOC_Os11g24560.1 LOC_Os11g24560 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.06 OrthoFinder output from all 47 species
MA_392802g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g12190.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species
Msp_g18554 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.04 OrthoFinder output from all 47 species
Nbi_g05423 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Ore_g15381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c10_18520V3.1 Pp3c10_18520 Sec23/Sec24 protein transport family protein 0.02 OrthoFinder output from all 47 species
Smo168140 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder output from all 47 species
Solyc01g081070.3.1 Solyc01g081070 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
Solyc09g092680.4.1 Solyc09g092680 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species
Zm00001e008888_P001 Zm00001e008888 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.04 OrthoFinder output from all 47 species
Zm00001e009959_P002 Zm00001e009959 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
Zm00001e021415_P001 Zm00001e021415 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012990 Sec23_24_beta_S 401 501
IPR006900 Sec23/24_helical_dom 516 614
IPR006896 Sec23/24_trunk_dom 122 390
IPR006895 Znf_Sec23_Sec24 54 92
IPR007123 Gelsolin-like_dom 630 716
No external refs found!