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  5. Ppi_g03202

Ppi_g03202


Description : associated component *(HDC1) of histone deacetylase machineries & original description: none


Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g03202

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00135320 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Adi_g011656 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Adi_g099378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05483 No alias associated component *(HDC1) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Als_g14047 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Aob_g03580 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Aspi01Gene47291.t1 Aspi01Gene47291 associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Cba_g07624 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Ceric.1Z065200.1 Ceric.1Z065200 associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Cre03.g182600 No alias Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Dac_g09686 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Dcu_g03126 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
GSVIVT01000253001 No alias Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
Lfl_g10369 No alias associated component *(HDC1) of histone deacetylase... 0.07 OrthoFinder output from all 47 species
MA_18805g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g12140.1 No alias associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Msp_g25492 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Nbi_g03166 No alias associated component *(HDC1) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Sam_g36521 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Solyc05g056340.3.1 Solyc05g056340 associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Zm00001e022328_P001 Zm00001e022328 associated component HDC1/Rxt3 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016575 histone deacetylation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR013951 Rxt3 526 568
No external refs found!