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  5. Ppi_g02308

Ppi_g02308


Description : regulatory protein *(CBP60) of systemic acquired resistance & original description: none


Gene families : OG0000494 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000494_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g02308
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
Aev_g13648 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Aspi01Gene72930.t1 Aspi01Gene72930 regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Dde_g05689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029152001 No alias Calmodulin-binding protein 60 B OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g04280.1 LOC_Os01g04280 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g60890.1 LOC_Os03g60890 Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g36660.1 LOC_Os04g36660 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os11g44200.1 LOC_Os11g44200 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Len_g59769 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Nbi_g21975 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Pir_g60058 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Solyc07g006830.4.1 Solyc07g006830 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0045048 protein insertion into ER membrane IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR046830 Calmod_bind_M 248 313
IPR046831 Calmodulin_bind_N 90 235
IPR046829 Calmod_bind_C 320 377
No external refs found!