Ppi_g01395 (SDE1, RDR6, SGS2)

Aliases : SDE1, RDR6, SGS2

Description : ssRNA polymerase *(RDR6) & original description: none

Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g01395

Target	Alias	Description	ECC score	Gene Family Method
AT3G49500	SDE1, RDR6, SGS2	RNA-dependent RNA polymerase 6	0.03	OrthoFinder output from all 47 species
Aob_g39991	ATRDRP1, RDR1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17564.t1	SDE1, RDR6,...	ssRNA polymerase *(RDR6) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene33143.t1	ATRDRP1, RDR1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g00962	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g01470	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	408	986

External Links

No external refs found!