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  5. Ppi_g01115

Ppi_g01115


Description : component *(ADA1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0001506 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001506_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g01115

Target Alias Description ECC score Gene Family Method Actions
AT4G31440 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from all 47 species
Ala_g01945 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aop_g10573 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
GSVIVT01000143001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
LOC_Os03g55450.1 LOC_Os03g55450 component ADA1 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Lfl_g02173 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Mp5g08050.1 No alias component ADA1 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Tin_g01184 No alias component *(ADA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Zm00001e005767_P001 Zm00001e005767 component ADA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Zm00001e011984_P001 Zm00001e011984 component ADA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Zm00001e041823_P001 Zm00001e041823 component ADA1 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0070461 SAGA-type complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR024738 Hfi1/Tada1 32 346
No external refs found!