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  5. AMTR_s03255p00000400

AMTR_s03255p00000400 (QRT3,...)


Aliases : QRT3, evm_27.TU.AmTr_v1.0_scaffold03255.1

Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.QRT3 polygalacturonase


Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s03255p00000400

Target Alias Description ECC score Gene Family Method Actions
AT4G20050 QRT3 Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g16592 QRT3 polygalacturonase *(QRT3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g35331 QRT3 polygalacturonase *(QRT3) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31759 QRT3 polygalacturonase *(QRT3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012139001 QRT3 Cell wall.pectin.modification and... 0.05 OrthoFinder output from all 47 species
MA_10425986g0020 QRT3 polygalacturonase (QRT3) 0.04 OrthoFinder output from all 47 species
MA_8818361g0010 QRT3 polygalacturonase (QRT3) 0.03 OrthoFinder output from all 47 species
MA_917578g0010 QRT3 polygalacturonase (QRT3) 0.03 OrthoFinder output from all 47 species
Ore_g26325 QRT3 polygalacturonase *(QRT3) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c1_12100V3.1 QRT3, Pp3c1_12100 Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009816 QRT3 polygalacturonase *(QRT3) & original description: CDS=14-1468 0.04 OrthoFinder output from all 47 species
Spa_g43106 QRT3 polygalacturonase *(QRT3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006958_P005 QRT3, Zm00001e006958 polygalacturonase (QRT3) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!