1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s02709p00005830

AMTR_s02709p00005830 (BIP1,...)


Aliases : BIP1, evm_27.TU.AmTr_v1.0_scaffold02709.1

Description : Luminal-binding protein OS=Solanum lycopersicum


Gene families : OG0000109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s02709p00005830

Target Alias Description ECC score Gene Family Method Actions
Gb_02154 AT-HSC70-1,... Probable mediator of RNA polymerase II transcription... 0.03 OrthoFinder output from all 47 species
Gb_11391 ATHSP70, HSP70 Probable mediator of RNA polymerase II transcription... 0.03 OrthoFinder output from all 47 species
LOC_Os03g16860.1 ATHSP70, HSP70,... chaperone (Hsp70) 0.04 OrthoFinder output from all 47 species
Lfl_g25034 AT-HSC70-1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g042560.3.1 Hsp70b, Solyc12g042560 Heat shock 70 kDa protein 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013126 Hsp_70_fam 1 97
IPR013126 Hsp_70_fam 98 314
No external refs found!