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  5. AMTR_s00354p00009120

AMTR_s00354p00009120 (PTAC10, PDE312,...)


Aliases : PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00354.1

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component


Gene families : OG0006411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00354p00009120
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT3G48500 PTAC10, PDE312 Nucleic acid-binding, OB-fold-like protein 0.1 OrthoFinder output from all 47 species
Adi_g052271 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.11 OrthoFinder output from all 47 species
Aop_g07043 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Azfi_s0353.g066638 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.06 OrthoFinder output from all 47 species
Cba_g04661 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Ceric.02G035300.1 PTAC10, PDE312,... cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.04 OrthoFinder output from all 47 species
GSVIVT01008490001 PTAC10, PDE312 RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 OrthoFinder output from all 47 species
Gb_30753 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Gb_30755 PTAC10, PDE312 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_30756 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g67570.1 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
MA_10428299g0010 PTAC10, PDE312 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_10435142g0010 PTAC10, PDE312 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14025g0020 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Mp4g08250.1 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Nbi_g28130 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Ppi_g15491 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Smo438805 PTAC10, PDE312 RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 OrthoFinder output from all 47 species
Solyc03g111050.3.1 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Zm00001e028549_P001 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004655 porphobilinogen synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!