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  5. AMTR_s00309p00013120

AMTR_s00309p00013120 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00309.2

Description : Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica


Gene families : OG0000682 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000682_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00309p00013120

Target Alias Description ECC score Gene Family Method Actions
Als_g36972 WIN2 clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07006.t1 WIN2, Aspi01Gene07006 clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s2479.g111678 WIN2 not classified & original description: CDS=271-942 0.03 OrthoFinder output from all 47 species
Cba_g11716 WIN2 clade F phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G081500.1 WIN2, Ceric.13G081500 clade F phosphatase & original description:... 0.04 OrthoFinder output from all 47 species
Nbi_g04069 WIN2 clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30135 WIN2 clade F phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009643 WIN2 clade F phosphatase & original description: CDS=131-997 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022663 No alias clade F phosphatase & original description: CDS=476-1387 0.04 OrthoFinder output from all 47 species
Tin_g25026 WIN2 clade F phosphatase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 97 334
No external refs found!