AMTR_s00185p00055680 (HIS1-3,...)

Aliases : HIS1-3, evm_27.TU.AmTr_v1.0_scaffold00185.23

Description : Chromatin organisation.histones.H1 linker histone

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00185p00055680
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
Ceric.34G011100.1	HIS1-3, Ceric.34G011100	linker histone *(H1) & original description:...	0.05	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Gb_03348	HIS1-3	linker histone (H1)	0.03	OrthoFinder output from all 47 species
LOC_Os04g18090.1	HIS1-3, LOC_Os04g18090	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Lfl_g30136	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10436125g0010	HIS1-3	linker histone (H1)	0.05	OrthoFinder output from all 47 species
Pnu_g02695	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c18_14270V3.1	Pp3c18_14270	winged-helix DNA-binding transcription factor family protein	0.01	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Zm00001e032965_P005	Zm00001e032965	linker histone (H1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	53	118

External Links

No external refs found!