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  5. AMTR_s00177p00030580

AMTR_s00177p00030580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00177.9

Description : Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00177p00030580
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00002p00268120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.04 OrthoFinder output from all 47 species
AMTR_s00009p00215930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
AMTR_s00009p00268260 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.02 OrthoFinder output from all 47 species
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.06 OrthoFinder output from all 47 species
AMTR_s00032p00029450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20770... 0.09 OrthoFinder output from all 47 species
AMTR_s00039p00130050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00058p00187000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33760... 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00035580 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.05 OrthoFinder output from all 47 species
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
AMTR_s00095p00039180 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Adi_g009543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036822 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05931 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43851.t1 Aspi01Gene43851 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06759 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Dac_g43238 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g48863 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03284 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25604 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000718 No alias not classified & original description: CDS=152-1756 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013529 No alias ssDNA-binding protein *(OSB) & original description: CDS=539-3667 0.04 OrthoFinder output from all 47 species
Sam_g08926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Solyc02g079380.2.1 CRR22, Solyc02g079380 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
Solyc07g005850.3.1 Solyc07g005850 Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
Tin_g04250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 323 339
IPR002885 Pentatricopeptide_repeat 65 90
IPR002885 Pentatricopeptide_repeat 293 322
IPR002885 Pentatricopeptide_repeat 119 157
IPR002885 Pentatricopeptide_repeat 219 267
No external refs found!