1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00168p00065430

AMTR_s00168p00065430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00168.25

Description : Solute transport.carrier-mediated transport.IT superfamily.putative silicon efflux transporter (LSI2-type)


Gene families : OG0000879 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00168p00065430
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Adi_g056338 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Adi_g056339 No alias putative silicon efflux transporter *(LSI2) & original... 0.03 OrthoFinder output from all 47 species
Aev_g16129 No alias putative silicon efflux transporter *(LSI2) & original... 0.04 OrthoFinder output from all 47 species
Aop_g18611 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Aop_g23883 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g36106 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g70471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32908.t1 Aspi01Gene32908 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62927.t1 Aspi01Gene62927 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07480 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g41359 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g28976 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g10667 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Msp_g35621 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Msp_g42191 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26561 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Sam_g06643 No alias putative silicon efflux transporter *(LSI2) & original... 0.01 OrthoFinder output from all 47 species
Smo148775 No alias Solute transport.carrier-mediated transport.IT... 0.02 OrthoFinder output from all 47 species
Solyc06g036100.3.1 Solyc06g036100 putative silicon efflux transporter (LSI2) 0.01 OrthoFinder output from all 47 species
Spa_g44746 No alias putative silicon efflux transporter *(LSI2) & original... 0.03 OrthoFinder output from all 47 species
Spa_g47898 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Tin_g02811 No alias putative silicon efflux transporter *(LSI2) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e000055_P001 Zm00001e000055 putative silicon efflux transporter (LSI2) 0.03 OrthoFinder output from all 47 species
Zm00001e002282_P001 Zm00001e002282 putative silicon efflux transporter (LSI2) 0.03 OrthoFinder output from all 47 species
Zm00001e023569_P001 Zm00001e023569 putative silicon efflux transporter (LSI2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005811 lipid droplet IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0012511 monolayer-surrounded lipid storage body IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
InterPro domains Description Start Stop
IPR004680 Cit_transptr-like_dom 18 286
No external refs found!