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  5. AMTR_s00157p00079360

AMTR_s00157p00079360 (ATRBP47C', RBP47C',...)


Aliases : ATRBP47C', RBP47C', evm_27.TU.AmTr_v1.0_scaffold00157.42

Description : Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00157p00079360
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.02 OrthoFinder output from all 47 species
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Aev_g09512 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ala_g08057 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Ala_g09913 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Als_g07576 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Als_g37557 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aspi01Gene47862.t1 Aspi01Gene47862 regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aspi01Gene52035.t1 Aspi01Gene52035 regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016117 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Cba_g03248 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Cba_g05169 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g07985 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Cba_g59919 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.30G047300.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
GSVIVT01031780001 ATRBP47B, RBP47B Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.04 OrthoFinder output from all 47 species
GSVIVT01037634001 RBP45B, ATRBP45B Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.04 OrthoFinder output from all 47 species
GSVIVT01037635001 ATRBP45C Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os04g37690.1 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Len_g17526 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Lfl_g33868 ATRBP45C regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
MA_10430323g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Msp_g08309 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Nbi_g09272 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Ore_g09196 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Pir_g06468 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Solyc01g108500.4.1 ATRBP47B,... mRNA-binding regulatory factor (RBP45/47) 0.05 OrthoFinder output from all 47 species
Solyc03g031720.3.1 ATRBP45C, Solyc03g031720 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Solyc10g005260.3.1 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.05 OrthoFinder output from all 47 species
Spa_g07132 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Zm00001e011585_P002 ATRBP45C, Zm00001e011585 mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Zm00001e022780_P001 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004550 nucleoside diphosphate kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006183 GTP biosynthetic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006228 UTP biosynthetic process IEP HCCA
BP GO:0006241 CTP biosynthetic process IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046036 CTP metabolic process IEP HCCA
BP GO:0046039 GTP metabolic process IEP HCCA
BP GO:0046051 UTP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 38 101
No external refs found!