AMTR_s00155p00067370 (ARF10,...)

Aliases : ARF10, evm_27.TU.AmTr_v1.0_scaffold00155.39

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00155p00067370

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00215270	ARF21,...	Auxin response factor 7 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
AMTR_s00061p00078770	ARF4,...	Auxin response factor 9 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
Ehy_g30682	ARF10	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g13520.1	ARF11, LOC_Os01g13520	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc07g043610.3.1	ARF6, Solyc07g043610	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Solyc07g043620.3.1	ARF6, Solyc07g043620	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e041248_P001	ARF10, Zm00001e041248	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	108	207
IPR010525	ARF_dom	227	305

External Links

No external refs found!

AMTR_s00155p00067370 (ARF10,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation