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Aliases : LBD22, evm_27.TU.AmTr_v1.0_scaffold00153.12
Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor
Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00153p00034160 | |
| Cluster | HCCA: Cluster_68 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G30340 | LBD13 | LOB domain-containing protein 13 | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g41387 | LBD4 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0072.g036906 | LBD15, ASL11 | AS2/LOB-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0225.g058902 | LBD4 | AS2/LOB-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g06562 | LBD15, ASL11 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01007677001 | LOB | RNA biosynthesis.transcriptional activation.AS2/LOB... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01016335001 | LBD11 | RNA biosynthesis.transcriptional activation.AS2/LOB... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_09463 | LBD11 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_16914 | LBD1 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_16918 | LBD11 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_19383 | LBD11 | transcription factor (AS2/LOB) | 0.05 | OrthoFinder output from all 47 species | |
| Gb_19384 | LBD11 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_22180 | LBD11 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_40645 | LBD3, ASL9 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g27980.1 | LBD12, ASL5,... | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| MA_126761g0010 | LBD20 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| Mp8g11560.1 | LBD20 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g08077 | LBD15, ASL11 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g57178 | LBD15, ASL11 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g05081 | AS2 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g11808 | AS2 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g31655 | LBD4 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g005090.3.1 | LBD11, Solyc06g005090 | transcription factor (AS2/LOB) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g050430.3.1 | LBD15, ASL11,... | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g55835 | LBD4 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g03811 | LBD15, ASL11 | AS2/LOB-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e031510_P001 | LBD12, ASL5,... | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e038429_P001 | LBD11, Zm00001e038429 | transcription factor (AS2/LOB) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| MF | GO:0005319 | lipid transporter activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006811 | monoatomic ion transport | IEP | HCCA |
| BP | GO:0006812 | monoatomic cation transport | IEP | HCCA |
| BP | GO:0006813 | potassium ion transport | IEP | HCCA |
| BP | GO:0006869 | lipid transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| MF | GO:0008324 | monoatomic cation transmembrane transporter activity | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| MF | GO:0015075 | monoatomic ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015079 | potassium ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | HCCA |
| MF | GO:0017089 | glycolipid transfer activity | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| BP | GO:0046836 | glycolipid transport | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| MF | GO:0051861 | glycolipid binding | IEP | HCCA |
| BP | GO:0055085 | transmembrane transport | IEP | HCCA |
| BP | GO:0071805 | potassium ion transmembrane transport | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0120013 | lipid transfer activity | IEP | HCCA |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004883 | LOB | 25 | 124 |
| No external refs found! |