1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00151p00046880

AMTR_s00151p00046880 (EBS,...)


Aliases : EBS, evm_27.TU.AmTr_v1.0_scaffold00151.6

Description : Chromatin organisation.histone modifications.histone deacetylation.SHL1 histone deacetylation complex recruiting protein


Gene families : OG0000671 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000671_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00151p00046880

Target Alias Description ECC score Gene Family Method Actions
Aev_g19901 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04223 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39553 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
Gb_10388 EBS component BAH of BAH-EMF1 Polycomb silencing complex 0.02 OrthoFinder output from all 47 species
Lfl_g06920 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012510 EBS component *(SHL/EBS) of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g12128 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25986 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004179_P001 EBS, Zm00001e004179 component BAH of BAH-EMF1 Polycomb silencing complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004411 homogentisate 1,2-dioxygenase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006559 L-phenylalanine catabolic process IEP HCCA
BP GO:0006570 tyrosine metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009074 aromatic amino acid family catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 23 135
IPR019787 Znf_PHD-finger 140 188
No external refs found!