AMTR_s00149p00054540 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00149.34

Description : Photosynthesis.photorespiration.glycine cleavage system.H-protein lipoamide-containing component

Gene families : OG0002114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002114_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00149p00054540
Cluster	HCCA: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
AT1G32470	No alias	Single hybrid motif superfamily protein	0.13	OrthoFinder output from all 47 species
AT2G35370	GDCH	glycine decarboxylase complex H	0.15	OrthoFinder output from all 47 species
Adi_g019861	No alias	lipoamide-containing component *(H-protein) of glycine...	0.1	OrthoFinder output from all 47 species
Adi_g094450	No alias	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Adi_g102943	No alias	lipoamide-containing component *(H-protein) of glycine...	0.08	OrthoFinder output from all 47 species
Aev_g23460	No alias	lipoamide-containing component *(H-protein) of glycine...	0.1	OrthoFinder output from all 47 species
Ala_g16182	No alias	lipoamide-containing component *(H-protein) of glycine...	0.1	OrthoFinder output from all 47 species
Als_g00184	No alias	lipoamide-containing component *(H-protein) of glycine...	0.13	OrthoFinder output from all 47 species
Aob_g05607	GDCH	lipoamide-containing component *(H-protein) of glycine...	0.02	OrthoFinder output from all 47 species
Aop_g01914	No alias	lipoamide-containing component *(H-protein) of glycine...	0.18	OrthoFinder output from all 47 species
Aspi01Gene43081.t1	Aspi01Gene43081	lipoamide-containing component *(H-protein) of glycine...	0.03	OrthoFinder output from all 47 species
Azfi_s0093.g043340	No alias	lipoamide-containing component *(H-protein) of glycine...	0.04	OrthoFinder output from all 47 species
Cba_g14008	No alias	lipoamide-containing component *(H-protein) of glycine...	0.1	OrthoFinder output from all 47 species
Ceric.01G108100.1	Ceric.01G108100	lipoamide-containing component *(H-protein) of glycine...	0.11	OrthoFinder output from all 47 species
Ceric.26G032600.1	Ceric.26G032600	lipoamide-containing component *(H-protein) of glycine...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000227.27	No alias	Photosynthesis.photorespiration.glycine cleavage...	0.01	OrthoFinder output from all 47 species
Cre06.g253350	No alias	Photosynthesis.photorespiration.glycine cleavage...	0.05	OrthoFinder output from all 47 species
Dac_g00295	No alias	lipoamide-containing component *(H-protein) of glycine...	0.09	OrthoFinder output from all 47 species
Dcu_g46571	No alias	lipoamide-containing component *(H-protein) of glycine...	0.11	OrthoFinder output from all 47 species
Dde_g02618	No alias	lipoamide-containing component *(H-protein) of glycine...	0.13	OrthoFinder output from all 47 species
Ehy_g00941	No alias	lipoamide-containing component *(H-protein) of glycine...	0.03	OrthoFinder output from all 47 species
GSVIVT01013175001	No alias	Photosynthesis.photorespiration.glycine cleavage...	0.16	OrthoFinder output from all 47 species
Gb_37034	GDCH	lipoamide-containing component H-protein of glycine...	0.13	OrthoFinder output from all 47 species
LOC_Os10g37180.1	LOC_Os10g37180	lipoamide-containing component H-protein of glycine...	0.07	OrthoFinder output from all 47 species
Len_g25183	No alias	lipoamide-containing component *(H-protein) of glycine...	0.09	OrthoFinder output from all 47 species
Lfl_g02714	No alias	lipoamide-containing component *(H-protein) of glycine...	0.04	OrthoFinder output from all 47 species
MA_20265g0010	No alias	lipoamide-containing component H-protein of glycine...	0.16	OrthoFinder output from all 47 species
Mp3g05780.1	No alias	lipoamide-containing component H-protein of glycine...	0.1	OrthoFinder output from all 47 species
Msp_g00128	No alias	lipoamide-containing component *(H-protein) of glycine...	0.12	OrthoFinder output from all 47 species
Nbi_g01783	No alias	lipoamide-containing component *(H-protein) of glycine...	0.09	OrthoFinder output from all 47 species
Ore_g27877	No alias	lipoamide-containing component *(H-protein) of glycine...	0.03	OrthoFinder output from all 47 species
Ore_g40804	No alias	lipoamide-containing component *(H-protein) of glycine...	0.04	OrthoFinder output from all 47 species
Pir_g02729	No alias	lipoamide-containing component *(H-protein) of glycine...	0.1	OrthoFinder output from all 47 species
Pp3c19_11600V3.1	Pp3c19_11600	Single hybrid motif superfamily protein	0.02	OrthoFinder output from all 47 species
Ppi_g08906	No alias	lipoamide-containing component *(H-protein) of glycine...	0.13	OrthoFinder output from all 47 species
Ppi_g14862	No alias	lipoamide-containing component *(H-protein) of glycine...	0.05	OrthoFinder output from all 47 species
Ppi_g28566	No alias	lipoamide-containing component *(H-protein) of glycine...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006297	No alias	lipoamide-containing component *(H-protein) of glycine...	0.11	OrthoFinder output from all 47 species
Sam_g08374	No alias	lipoamide-containing component *(H-protein) of glycine...	0.03	OrthoFinder output from all 47 species
Smo113331	No alias	Photosynthesis.photorespiration.glycine cleavage...	0.04	OrthoFinder output from all 47 species
Spa_g12562	No alias	lipoamide-containing component *(H-protein) of glycine...	0.13	OrthoFinder output from all 47 species
Spa_g12563	No alias	lipoamide-containing component *(H-protein) of glycine...	0.13	OrthoFinder output from all 47 species
Spa_g14635	No alias	lipoamide-containing component *(H-protein) of glycine...	0.1	OrthoFinder output from all 47 species
Spa_g21862	No alias	lipoamide-containing component *(H-protein) of glycine...	0.08	OrthoFinder output from all 47 species
Tin_g09642	No alias	lipoamide-containing component *(H-protein) of glycine...	0.05	OrthoFinder output from all 47 species
Zm00001e039579_P001	GDCH, Zm00001e039579	lipoamide-containing component H-protein of glycine...	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005960	glycine cleavage complex	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	None	Extended
BP	GO:0006546	glycine catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009063	amino acid catabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009071	serine family amino acid catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0009496	plastoquinol--plastocyanin reductase activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0052880	oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002930	GCV_H	38	157

External Links

No external refs found!

AMTR_s00149p00054540 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation