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  5. AMTR_s00133p00020030

AMTR_s00133p00020030 (ATWHY1, WHY1, PTAC1,...)


Aliases : ATWHY1, WHY1, PTAC1, evm_27.TU.AmTr_v1.0_scaffold00133.2

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor


Gene families : OG0002379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002379_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00133p00020030
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT2G02740 WHY3, PTAC11, ATWHY3 ssDNA-binding transcriptional regulator 0.03 OrthoFinder output from all 47 species
Len_g13615 ATWHY1, WHY1, PTAC1 recombination mediator *(Whirly) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08784 ATWHY1, WHY1, PTAC1 recombination mediator *(Whirly) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11234 ATWHY1, WHY1, PTAC1 recombination mediator *(Whirly) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26219 ATWHY1, WHY1, PTAC1 recombination mediator *(Whirly) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g007100.3.1 ATWHY1, WHY1,... recombination mediator (Whirly). Whirly-type plastidial... 0.05 OrthoFinder output from all 47 species
Zm00001e029993_P002 ATWHY1, WHY1,... recombination mediator (Whirly). Whirly-type plastidial... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013742 Whirly 97 235
No external refs found!