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  5. AMTR_s00130p00119570

AMTR_s00130p00119570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00130.69

Description : Cytochrome c oxidase subunit 3 OS=Oenothera berteroana


Gene families : OG0004952 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004952_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00130p00119570
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT2G07687 No alias Cytochrome c oxidase, subunit III 0.08 OrthoFinder output from all 47 species
ATMG00730 COX3 cytochrome c oxidase subunit 3 0.08 OrthoFinder output from all 47 species
Aev_g12777 No alias component *(COX3) of cytochrome c oxidase complex &... 0.04 OrthoFinder output from all 47 species
Ala_g33916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26828 No alias component *(COX3) of cytochrome c oxidase complex &... 0.03 OrthoFinder output from all 47 species
Ceric.01G075700.1 Ceric.01G075700 not classified & original description: pacid=50591411... 0.02 OrthoFinder output from all 47 species
Ceric.02G004800.1 Ceric.02G004800 not classified & original description: pacid=50585851... 0.06 OrthoFinder output from all 47 species
Ceric.17G026400.1 Ceric.17G026400 not classified & original description: pacid=50618566... 0.05 OrthoFinder output from all 47 species
Ceric.1Z245400.1 Ceric.1Z245400 not classified & original description: pacid=50638982... 0.04 OrthoFinder output from all 47 species
Ceric.23G013500.1 Ceric.23G013500 not classified & original description: pacid=50609990... 0.03 OrthoFinder output from all 47 species
Ceric.25G023200.1 Ceric.25G023200 not classified & original description: pacid=50593624... 0.03 OrthoFinder output from all 47 species
Cre04.g221700 No alias Cytochrome c oxidase subunit 3 OS=Prototheca wickerhamii 0.02 OrthoFinder output from all 47 species
Gb_02258 No alias membrane-anchor component SDH4 of succinate dehydrogenase complex 0.09 OrthoFinder output from all 47 species
Gb_11481 No alias Cytochrome c oxidase subunit 3 OS=Aegilops columnaris... 0.12 OrthoFinder output from all 47 species
Gb_16379 No alias Cytochrome c oxidase subunit 3 OS=Oenothera berteroana... 0.11 OrthoFinder output from all 47 species
Gb_30335 No alias Cytochrome c oxidase subunit 3 OS=Aegilops columnaris... 0.04 OrthoFinder output from all 47 species
Gb_37215 No alias Cytochrome c oxidase subunit 3 OS=Oenothera berteroana... 0.03 OrthoFinder output from all 47 species
Gb_41740 No alias Cytochrome c oxidase subunit 3 OS=Oenothera berteroana... 0.08 OrthoFinder output from all 47 species
Len_g02696 No alias component *(COX3) of cytochrome c oxidase complex &... 0.02 OrthoFinder output from all 47 species
MA_10429360g0030 No alias Cytochrome c oxidase subunit 3 OS=Helianthus annuus... 0.03 OrthoFinder output from all 47 species
Nbi_g14648 No alias component *(COX3) of cytochrome c oxidase complex &... 0.07 OrthoFinder output from all 47 species
Sam_g03259 No alias component *(COX3) of cytochrome c oxidase complex &... 0.04 OrthoFinder output from all 47 species
Solyc00g500303.1.1 Solyc00g500303 component COX3 of cytochrome c oxidase complex 0.08 OrthoFinder output from all 47 species
Tin_g06756 No alias component *(COX3) of cytochrome c oxidase complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e037217_P001 Zm00001e037217 component COX3 of cytochrome c oxidase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0042773 ATP synthesis coupled electron transport IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR000298 Cyt_c_oxidase-like_su3 4 199
No external refs found!