Aliases : evm_27.TU.AmTr_v1.0_scaffold00130.37
Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL1 component
Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00130p00080480 | |
Cluster | HCCA: Cluster_108 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G42710 | No alias | Ribosomal protein L1p/L10e family | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene55149.t1 | Aspi01Gene55149 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g25894 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.35G025200.1 | Ceric.35G025200 | component *(uL1m) of large mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g01381 | No alias | component *(uL1m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os06g35470.1 | LOC_Os06g35470 | component mtRPL1 of large ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
Len_g24587 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g19309 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
MA_10112138g0010 | No alias | 50S ribosomal protein L1, chloroplastic OS=Spinacia... | 0.06 | OrthoFinder output from all 47 species | |
Pnu_g27467 | No alias | component *(uL1m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0097.g019423 | No alias | component *(uL1m) of large mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g13571 | No alias | component *(uL1m) of large mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Solyc12g013990.3.1 | Solyc12g013990 | component mtRPL1 of large ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e037138_P001 | Zm00001e037138 | component mtRPL1 of large ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
CC | GO:0015934 | large ribosomal subunit | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003924 | GTPase activity | IEP | HCCA |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | HCCA |
MF | GO:0004358 | glutamate N-acetyltransferase activity | IEP | HCCA |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | HCCA |
MF | GO:0004674 | protein serine/threonine kinase activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006525 | arginine metabolic process | IEP | HCCA |
BP | GO:0006526 | arginine biosynthetic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | HCCA |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | HCCA |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | HCCA |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0019238 | cyclohydrolase activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002143 | Ribosomal_L1 | 264 | 461 |
No external refs found! |