Zm00001d024752


Description : 20.2.2 stress.abiotic.cold Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. RARE COLD INDUCIBLE GENE 3 (RCI3)


Gene families : OG_01_0000661 (Gene family) Phylogenetic Tree(s): OG0000661_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d024752
Cluster HCCA cluster: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g22370 Os01g0327400 26.12 misc.peroxidases Peroxidase superfamily protein 0.02 Gene family
LOC_Os03g02920 Os03g0121200 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.02 Gene family
LOC_Os03g02939 Os03g0121300 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.02 Gene family
LOC_Os05g04490 Os05g0135400 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.05 Gene family
LOC_Os10g39170 Os10g0536700 26.12 misc.peroxidases Peroxidase superfamily protein 0.06 Gene family
MA_10433564g0020 No alias 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.02 Gene family
MA_9457778g0010 No alias 26.12 misc.peroxidases encodes peroxidase involved in... 0.02 Gene family
Smo132865 PACid_15408438 26.12 misc.peroxidases Peroxidase superfamily protein... 0.02 Gene family
Smo229953 PACid_15414584 26.12 misc.peroxidases Peroxidase superfamily protein... 0.02 Gene family
Zm00001d024750 No alias 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.04 Gene family
Zm00001d029747 GRMZM2G085198 20.2.2 stress.abiotic.cold Encodes a cold-inducible... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEA InterProScan
BP GO:0006979 response to oxidative stress IEA InterProScan
MF GO:0020037 heme binding IEA InterProScan
BP GO:0055114 oxidation-reduction process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002016 Haem_peroxidase 48 296
No external refs found!