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  5. AMTR_s00129p00061730

AMTR_s00129p00061730 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00129.34

No description available


Gene families : OG0003085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00129p00061730
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT4G25030 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT5G45410 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
Als_g15787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21713 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47190.t1 Aspi01Gene47190 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre17.g710900 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g03550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016311001 No alias No description available 0.06 OrthoFinder output from all 47 species
MA_83834g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pnu_g25508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g056080.4.1 Solyc05g056080 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!