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  5. AMTR_s00129p00037970

AMTR_s00129p00037970 (APUM23, PUM23,...)


Aliases : APUM23, PUM23, evm_27.TU.AmTr_v1.0_scaffold00129.17

Description : RNA biosynthesis.rRNA biogenesis.APUM23 factor


Gene families : OG0006067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00129p00037970

Target Alias Description ECC score Gene Family Method Actions
Adi_g102169 APUM23, PUM23 rRNA biogenesis auxiliary factor *(APUM23) & original... 0.04 OrthoFinder output from all 47 species
Ceric.04G089900.1 APUM23, PUM23,... rRNA biogenesis auxiliary factor *(APUM23) & original... 0.05 OrthoFinder output from all 47 species
Cre16.g649600 No alias RNA biosynthesis.rRNA biogenesis.APUM23 factor 0.03 OrthoFinder output from all 47 species
Dac_g12482 APUM23, PUM23 rRNA biogenesis auxiliary factor *(APUM23) & original... 0.03 OrthoFinder output from all 47 species
Gb_11167 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp4g22460.1 APUM23, PUM23 APUM23 rRNA biogenesis auxiliary factor 0.03 OrthoFinder output from all 47 species
Ore_g07959 APUM23, PUM23 rRNA biogenesis auxiliary factor *(APUM23) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e002822_P001 APUM23, PUM23,... APUM23 rRNA biogenesis auxiliary factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!