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Aliases : evm_27.TU.AmTr_v1.0_scaffold00111.120
Description : RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum
Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00111p00140620 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G16830 | No alias | Hyaluronan / mRNA binding family | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g054126 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g18185 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g12133 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g17505 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.19G044900.1 | Ceric.19G044900 | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g01517 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g06696 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| MA_141447g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g04627 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g06151 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g08261 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g32317 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g24728 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g20153 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g090190.3.1 | Solyc01g090190 | RGG repeats nuclear RNA binding protein A OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g18779 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g31252 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g50119 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g51990 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e026661_P002 | Zm00001e026661 | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| BP | GO:0006606 | protein import into nucleus | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| BP | GO:0008037 | cell recognition | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| MF | GO:0008565 | obsolete protein transporter activity | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| BP | GO:0034504 | protein localization to nucleus | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| BP | GO:0048544 | recognition of pollen | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051170 | import into nucleus | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| No external refs found! |