AMTR_s00110p00042430 (CLPB3, CLPB-P, APG6,...)

Aliases : CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17

Description : External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein

Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00110p00042430

Target	Alias	Description	ECC score	Gene Family Method
AT5G50920	HSP93-V, DCA1,...	CLPC homologue 1	0.06	OrthoFinder output from all 47 species
Adi_g010878	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g088541	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.08	OrthoFinder output from all 47 species
Aev_g28850	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Ala_g11691	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.07	OrthoFinder output from all 47 species
Ala_g12182	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g16086	HSP93-V, DCA1,...	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Als_g32977	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Als_g47842	HSP93-V, DCA1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g06718	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Aob_g07406	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Aop_g08864	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cba_g04072	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Cba_g20998	HSP93-V, DCA1,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g33300	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g37964	CLPB3, CLPB-P, APG6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.15G073100.1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000655.28	HSP93-V, DCA1,...	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001416.7	SAG15, CLPD, ERD1	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001416.8	HSP93-III,...	Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre02.g143307	No alias	No description available	0.03	OrthoFinder output from all 47 species
Cre43.g760497	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Dcu_g03157	SAG15, CLPD, ERD1	chaperone component *(ClpD) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Dcu_g14360	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Dcu_g20889	CLPB3, CLPB-P, APG6	EC_3.2 glycosylase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g24879	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.1	OrthoFinder output from all 47 species
Ehy_g14485	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Ehy_g21280	HSP93-V, DCA1,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os02g32520.1	SAG15, CLPD,...	chaperone component ClpD of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species
LOC_Os12g12850.1	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.05	OrthoFinder output from all 47 species
Len_g14887	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.08	OrthoFinder output from all 47 species
Lfl_g02311	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g07411	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
MA_114459g0010	HSP93-V, DCA1,...	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_1160713g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.07	OrthoFinder output from all 47 species
MA_145425g0010	HSP93-V, DCA1,...	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_1712g0010	HSP93-V, DCA1,...	Chaperone protein ClpC, chloroplastic OS=Pisum sativum...	0.03	OrthoFinder output from all 47 species
MA_229920g0010	CLPB3, CLPB-P, APG6	Chaperone protein ClpB2, chloroplastic OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_596288g0010	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa...	0.11	OrthoFinder output from all 47 species
MA_65213g0010	HSP93-V, DCA1,...	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_8117g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.09	OrthoFinder output from all 47 species
Mp1g02560.1	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.02	OrthoFinder output from all 47 species
Msp_g23938	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Nbi_g09665	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10414	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ore_g29985	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.06	OrthoFinder output from all 47 species
Pir_g16593	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g10514	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Pnu_g20880	ATHSP101, HOT1, HSP101	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g03943	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Sam_g16601	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Sam_g16602	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.06	OrthoFinder output from all 47 species
Sam_g19448	No alias	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g42976	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo439163	HSP93-V, DCA1,...	External stimuli response.temperature.Hsp...	0.02	OrthoFinder output from all 47 species
Solyc12g042060.3.1	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.07	OrthoFinder output from all 47 species
Spa_g19032	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.08	OrthoFinder output from all 47 species
Spa_g38742	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Spa_g46302	CLPB3, CLPB-P, APG6	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g47608	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.06	OrthoFinder output from all 47 species
Zm00001e039805_P002	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.06	OrthoFinder output from all 47 species
Zm00001e040778_P001	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	IEA	Interproscan
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004176	Clp_R_dom	187	236
IPR004176	Clp_R_dom	110	159
IPR003959	ATPase_AAA_core	294	426
IPR019489	Clp_ATPase_C	866	945

External Links

No external refs found!

AMTR_s00110p00042430 (CLPB3, CLPB-P, APG6,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation