AMTR_s00109p00129480 (emb2726,...)

Aliases : emb2726, evm_27.TU.AmTr_v1.0_scaffold00109.135

Description : Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor

Gene families : OG0003250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003250_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00109p00129480

Target	Alias	Description	ECC score	Gene Family Method
AT4G29060	emb2726	elongation factor Ts family protein	0.09	OrthoFinder output from all 47 species
Adi_g053355	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Adi_g118105	emb2726	translation elongation factor *(EF-Ts) & original...	0.05	OrthoFinder output from all 47 species
Aev_g28882	emb2726	translation elongation factor *(EF-Ts) & original...	0.07	OrthoFinder output from all 47 species
Ala_g13148	emb2726	translation elongation factor *(EF-Ts) & original...	0.05	OrthoFinder output from all 47 species
Ala_g21504	emb2726	translation elongation factor *(EF-Ts) & original...	0.02	OrthoFinder output from all 47 species
Ala_g30187	emb2726	translation elongation factor *(EF-Ts) & original...	0.07	OrthoFinder output from all 47 species
Aob_g08834	emb2726	translation elongation factor *(EF-Ts) & original...	0.08	OrthoFinder output from all 47 species
Aop_g04344	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Aop_g25286	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene06612.t2	emb2726, Aspi01Gene06612	translation elongation factor *(EF-Ts) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene11644.t1	emb2726, Aspi01Gene11644	translation elongation factor *(EF-Ts) & original...	0.07	OrthoFinder output from all 47 species
Cba_g71569	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Ceric.03G081000.1	emb2726, Ceric.03G081000	translation elongation factor *(EF-Ts) & original...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021319.56	emb2726	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Cre12.g519180	emb2726	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Dac_g16809	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Dac_g16810	emb2726	translation elongation factor *(EF-Ts) & original...	0.06	OrthoFinder output from all 47 species
Dcu_g01025	emb2726	translation elongation factor *(EF-Ts) & original...	0.03	OrthoFinder output from all 47 species
Dde_g06930	emb2726	translation elongation factor *(EF-Ts) & original...	0.06	OrthoFinder output from all 47 species
Ehy_g05564	emb2726	translation elongation factor *(EF-Ts) & original...	0.07	OrthoFinder output from all 47 species
Ehy_g26260	emb2726	translation elongation factor *(EF-Ts) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01015347001	emb2726	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Gb_29672	emb2726	EF-Ts translation elongation factor	0.08	OrthoFinder output from all 47 species
LOC_Os12g35630.1	emb2726, LOC_Os12g35630	EF-Ts translation elongation factor	0.05	OrthoFinder output from all 47 species
Len_g59815	emb2726	translation elongation factor *(EF-Ts) & original...	0.09	OrthoFinder output from all 47 species
MA_10436165g0010	emb2726	EF-Ts translation elongation factor	0.07	OrthoFinder output from all 47 species
Mp2g23510.1	emb2726	EF-Ts translation elongation factor	0.06	OrthoFinder output from all 47 species
Msp_g12193	emb2726	translation elongation factor *(EF-Ts) & original...	0.09	OrthoFinder output from all 47 species
Nbi_g14225	emb2726	translation elongation factor *(EF-Ts) & original...	0.06	OrthoFinder output from all 47 species
Ore_g00299	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Ore_g08953	emb2726	translation elongation factor *(EF-Ts) & original...	0.06	OrthoFinder output from all 47 species
Pir_g07418	emb2726	translation elongation factor *(EF-Ts) & original...	0.02	OrthoFinder output from all 47 species
Pir_g42601	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g11907	emb2726	translation elongation factor *(EF-Ts) & original...	0.05	OrthoFinder output from all 47 species
Pnu_g13399	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Ppi_g29843	emb2726	translation elongation factor *(EF-Ts) & original...	0.09	OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022632	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Smo60716	emb2726	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Solyc07g018360.3.1	emb2726, Solyc07g018360	EF-Ts translation elongation factor	0.09	OrthoFinder output from all 47 species
Spa_g11112	emb2726	translation elongation factor *(EF-Ts) & original...	0.04	OrthoFinder output from all 47 species
Spa_g21728	emb2726	translation elongation factor *(EF-Ts) & original...	0.02	OrthoFinder output from all 47 species
Tin_g03798	emb2726	translation elongation factor *(EF-Ts) & original...	0.09	OrthoFinder output from all 47 species
Zm00001e010912_P001	emb2726, Zm00001e010912	EF-Ts translation elongation factor	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003746	translation elongation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
BP	GO:0006414	translational elongation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004618	phosphoglycerate kinase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006772	thiamine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009228	thiamine biosynthetic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034309	primary alcohol biosynthetic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003029	S1_domain	138	209
IPR003029	S1_domain	253	317
IPR014039	Transl_elong_EFTs/EF1B_dimer	1055	1160
IPR014039	Transl_elong_EFTs/EF1B_dimer	774	814
IPR014039	Transl_elong_EFTs/EF1B_dimer	1019	1059
IPR014039	Transl_elong_EFTs/EF1B_dimer	809	915

External Links

No external refs found!

AMTR_s00109p00129480 (emb2726,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation