Sequence Description Alias PCC hrr AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9588982868719313 2 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component RPL4, evm_27.TU.AmTr_v1.0_scaffold00029.338 0.9585516333997182 2 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9513309150461824 7 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.9391396338608323 4 AMTR_s00149p00031690 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor ATSCO1/CPEF-G, SCO1, ATSCO1, evm_27.TU.AmTr_v1.0_scaffold00149.10 0.9390435628176121 5 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.9339672875398513 6 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.9314371822188984 7 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase SQD2, evm_27.TU.AmTr_v1.0_scaffold00029.342 0.930564675026161 8 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor IDD4, AtIDD4, evm_27.TU.AmTr_v1.0_scaffold00032.84 0.9274464416308671 9 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor ATCFM3A, CFM3A, evm_27.TU.AmTr_v1.0_scaffold00002.494 0.9250637627456828 10 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.9246520083066928 14 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.9236650480578443 12 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP, evm_27.TU.AmTr_v1.0_scaffold00126.1 0.923352722581085 13 AMTR_s00053p00151810 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond V157, PDE166, ALB1, CHLD, ALB-1V, evm_27.TU.AmTr_v1.0_scaffold00053.99 0.9232628317480365 14 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase PGK1, evm_27.TU.AmTr_v1.0_scaffold00062.192 0.9230710675898367 19 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase FNR1, ATLFNR1, evm_27.TU.AmTr_v1.0_scaffold00016.69 0.9199633778582611 49 AMTR_s00037p00164200 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIII-type starch synthase ATSS3, SS3, evm_27.TU.AmTr_v1.0_scaffold00037.78 0.9196438448922641 17 AMTR_s00451p00003410 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1, evm_27.TU.AmTr_v1.0_scaffold00451.1 0.9190825114209057 18 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPA-1, GAPA, evm_27.TU.AmTr_v1.0_scaffold00016.302 0.9163031120173707 30 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.916036228979789 27 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.9156441074994763 31 AMTR_s00017p00154940 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).PsbS-dependent machinery.PsbS protein NPQ4, PSBS, evm_27.TU.AmTr_v1.0_scaffold00017.71 0.9152936702093987 22 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 NDF5, evm_27.TU.AmTr_v1.0_scaffold00004.63 0.9135776246925951 31 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.9133212944234521 24 AMTR_s00006p00263760 Disease resistance protein RPM1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.255 0.9123250250307102 25 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9109694041479288 50 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, evm_27.TU.AmTr_v1.0_scaffold00016.120 0.9095923350130823 27 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9088296943726613 61 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423 0.9084106174705887 29 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9079292437207925 51 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor GUN4, evm_27.TU.AmTr_v1.0_scaffold00049.26 0.906814604121489 31 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.9061538154294255 32 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH13, OSA1, ATH13, ATOSA1, evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9050880841156951 76 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00354.1 0.9049285506385871 38 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2, evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9046090239991498 52 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.9031562595228505 36 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88, evm_27.TU.AmTr_v1.0_scaffold00006.165 0.9029368153277717 41 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9010275254225579 61 AMTR_s00092p00096920 Protein biosynthesis.organelle translation machineries.translation initiation.IF-2 initiation factor FUG1, evm_27.TU.AmTr_v1.0_scaffold00092.54 0.9002980036531671 39 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32 0.9000370870551457 59 AMTR_s00135p00058090 Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00135.24 0.8999622122025027 41 AMTR_s00045p00209230 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component PPI2, ATTOC159, TOC159, TOC160, TOC86, evm_27.TU.AmTr_v1.0_scaffold00045.285 0.899938233615476 42 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.8996184586510829 51 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase PMH2, ATRH53, evm_27.TU.AmTr_v1.0_scaffold00126.53 0.8992898707650467 44 AMTR_s00005p00203240 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00005.80 0.8991282859896896 45 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease ATEGY2, EGY2, evm_27.TU.AmTr_v1.0_scaffold00029.376 0.8987123332891485 48 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B, evm_27.TU.AmTr_v1.0_scaffold00003.202 0.896458402119214 47 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A, evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8961167984274269 48 AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor JKD, evm_27.TU.AmTr_v1.0_scaffold00007.32 0.8947632073568135 49 AMTR_s00019p00088750 Protein TSS OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.66 0.8939958137596372 51 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8915757376216694 52 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28, evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8913625082943115 53 AMTR_s00122p00139490 Root phototropism protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00122.75 0.8904910851963681 54 AMTR_s00147p00070270 Cytoskeleton.cp-actin-dependent plastid movement.CHUP motility factor CHUP1, evm_27.TU.AmTr_v1.0_scaffold00147.32 0.8885902585046597 55 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase GPX1, ATGPX1, evm_27.TU.AmTr_v1.0_scaffold00065.18 0.8884636176045433 56 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.8839155840678399 66 AMTR_s00011p00245550 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.144 0.8837636772876514 58 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease EGY1, evm_27.TU.AmTr_v1.0_scaffold00004.86 0.8837466618568687 100 AMTR_s00011p00258380 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1, evm_27.TU.AmTr_v1.0_scaffold00011.182 0.8836458921545715 60 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.8833108903322786 79 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8829335671529627 62 AMTR_s00044p00107090 Cytoskeleton.cp-actin-dependent plastid movement.PMI1/PMI15 cp-actin stability factor PMI1, evm_27.TU.AmTr_v1.0_scaffold00044.78 0.8827108138716989 63 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.8822015222842421 88 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH5, VAR1, evm_27.TU.AmTr_v1.0_scaffold00001.249 0.8821662404616322 65 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8806104766079942 83 AMTR_s00165p00028990 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00165.13 0.8803727468622167 67 AMTR_s00103p00143070 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.100 0.8802311671269025 68 AMTR_s00024p00153080 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-2 kinase evm_27.TU.AmTr_v1.0_scaffold00024.107 0.880061002750056 69 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component NDH48, NDF1, evm_27.TU.AmTr_v1.0_scaffold00065.208 0.8785205756049626 70 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1, evm_27.TU.AmTr_v1.0_scaffold00003.203 0.8777261392483687 98 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component CCB4, evm_27.TU.AmTr_v1.0_scaffold00028.110 0.8774741917230198 73 AMTR_s00071p00016000 Redox homeostasis.chloroplast redox homeostasis.M-type thioredoxin ATHM2, evm_27.TU.AmTr_v1.0_scaffold00071.5 0.8769385407632768 76 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.8755847329350908 75 AMTR_s00036p00109340 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component RPL12-A, RPL12, evm_27.TU.AmTr_v1.0_scaffold00036.44 0.8749006699923235 77 AMTR_s00062p00201460 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor CaS, evm_27.TU.AmTr_v1.0_scaffold00062.212 0.8731370573442223 78 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.872854808589554 97 AMTR_s00032p00227150 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00032.244 0.8725567351782395 80 AMTR_s00092p00098850 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.56 0.8722814171488493 81 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.8715635048349017 91 AMTR_s00076p00039590 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase ABA1, IBS3, ATABA1, ZEP, NPQ2, LOS6, ATZEP, evm_27.TU.AmTr_v1.0_scaffold00076.7 0.8700878691199028 84 AMTR_s00011p00136520 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP8/TAC6 component PTAC6, evm_27.TU.AmTr_v1.0_scaffold00011.39 0.8692779544223906 85 AMTR_s00010p00259290 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.PKS phototropin signalling factor PKS4, evm_27.TU.AmTr_v1.0_scaffold00010.421 0.8692176660075649 86 AMTR_s00058p00152490 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.phosphorylation/dephosphorylation.PPH1/TAP38 phosphatase TAP38, PPH1, evm_27.TU.AmTr_v1.0_scaffold00058.124 0.869054937912463 87 AMTR_s00109p00140320 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00109.150 0.8689397407347493 88 AMTR_s00107p00109770 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.FtsH4/11 component FTSH11, evm_27.TU.AmTr_v1.0_scaffold00107.33 0.8687199784358516 89 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) TZ, THI4, THI1, evm_27.TU.AmTr_v1.0_scaffold00005.125 0.8672884683836305 92 AMTR_s00061p00032260 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana PDE322, CP33, evm_27.TU.AmTr_v1.0_scaffold00061.6 0.8671234062191348 96 AMTR_s00044p00131190 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB, evm_27.TU.AmTr_v1.0_scaffold00044.119 0.866662186496154 95 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.8661209340108328 96 AMTR_s00107p00020160 Redox homeostasis.chloroplast redox homeostasis.NADPH-dependent thioredoxin reductase NTRC, evm_27.TU.AmTr_v1.0_scaffold00107.3 0.8659424558149742 97 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC, evm_27.TU.AmTr_v1.0_scaffold00097.13 0.8656513466132764 98 AMTR_s00064p00107710 RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor GATA22, CGA1, GNL, evm_27.TU.AmTr_v1.0_scaffold00064.40 0.8649909377213966 100