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  5. AMTR_s00109p00118420

AMTR_s00109p00118420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.117

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NUG1/NSN1 regulatory GTPase


Gene families : OG0005439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00118420

Target Alias Description ECC score Gene Family Method Actions
AT3G07050 No alias GTP-binding family protein 0.05 OrthoFinder output from all 47 species
Aop_g13986 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012682 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.03 OrthoFinder output from all 47 species
Ceric.24G062000.1 Ceric.24G062000 regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001215.14 No alias Guanine nucleotide-binding protein-like NSN1... 0.02 OrthoFinder output from all 47 species
Cre12.g533050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01028584001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os01g27730.1 LOC_Os01g27730 NUG1/NSN1 LSU processome regulatory GTPase 0.04 OrthoFinder output from all 47 species
Len_g15925 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.03 OrthoFinder output from all 47 species
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.07 OrthoFinder output from all 47 species
Ore_g18478 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.03 OrthoFinder output from all 47 species
Pp3c12_9000V3.1 Pp3c12_9000 GTP-binding family protein 0.01 OrthoFinder output from all 47 species
Ppi_g40488 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.02 OrthoFinder output from all 47 species
Solyc06g083520.3.1 Solyc06g083520 NUG1/NSN1 LSU processome regulatory GTPase 0.04 OrthoFinder output from all 47 species
Solyc09g061430.3.1 Solyc09g061430 NUG1/NSN1 LSU processome regulatory GTPase 0.1 OrthoFinder output from all 47 species
Zm00001e004937_P002 Zm00001e004937 NUG1/NSN1 LSU processome regulatory GTPase 0.11 OrthoFinder output from all 47 species
Zm00001e012467_P001 Zm00001e012467 NUG1/NSN1 LSU processome regulatory GTPase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006184 obsolete GTP catabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR014813 Gnl3_N_dom 16 93
IPR006073 GTP-bd 272 327
No external refs found!