Sequence Description Alias PCC hrr AMTR_s00092p00090110 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA chromatin transcription factor PARL1, ATNUC-L1, NUC-L1, evm_27.TU.AmTr_v1.0_scaffold00092.50 0.9523296124776545 2 AMTR_s00031p00165100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.70 0.9358654782078876 3 AMTR_s00058p00122560 Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.84 0.9091821810769363 3 AMTR_s00006p00242700 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA1 assembly factor EDA13, EDA19, SWA1, evm_27.TU.AmTr_v1.0_scaffold00006.119 0.9060084346960409 4 AMTR_s00082p00169320 RNA biosynthesis.transcriptional activation.GeBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00082.40 0.9053538846565341 8 AMTR_s00040p00151890 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF12 component TAFII58, TAF12, evm_27.TU.AmTr_v1.0_scaffold00040.125 0.9037808149927745 14 AMTR_s00095p00019470 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.6 0.8976371497693121 16 AMTR_s00091p00066640 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL19 component evm_27.TU.AmTr_v1.0_scaffold00091.17 0.8932003442901169 8 AMTR_s00096p00039880 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Mpp10 assembly factor evm_27.TU.AmTr_v1.0_scaffold00096.17 0.892558247959554 25 AMTR_s00013p00226180 UPF0235 protein At5g63440 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00013.170 0.8892975857843626 10 AMTR_s00119p00124540 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.Tom40 component TOM40, evm_27.TU.AmTr_v1.0_scaffold00119.97 0.8874503874761027 25 AMTR_s00047p00118220 evm_27.TU.AmTr_v1.0_scaffold00047.47 0.8859527764157382 12 AMTR_s00025p00100140 RNA biosynthesis.transcriptional activation.HUA2 transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.84 0.8844946853801512 33 AMTR_s00018p00254940 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.167 0.8844385194870131 36 AMTR_s00019p00255470 Protein biosynthesis.translation elongation.eEF1B eEF1A-GDP-recycling complex.eEF1B-gamma component evm_27.TU.AmTr_v1.0_scaffold00019.442 0.8817890515014987 72 AMTR_s00110p00064100 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOB1 endonuclease evm_27.TU.AmTr_v1.0_scaffold00110.28 0.8817242636810492 33 AMTR_s00030p00132070 Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana ATRZ-1A, evm_27.TU.AmTr_v1.0_scaffold00030.79 0.8810597411325767 17 AMTR_s00059p00183080 Chromatin organisation.histone chaperone activities.NASP-type histone chaperone evm_27.TU.AmTr_v1.0_scaffold00059.197 0.8807514057340727 35 AMTR_s00089p00034850 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN2 regulatory component evm_27.TU.AmTr_v1.0_scaffold00089.9 0.879182450529441 66 AMTR_s00068p00090790 Cytoskeleton.microtubular network.alpha-beta-Tubulin heterodimer.alpha-Tubulin component TUA3, evm_27.TU.AmTr_v1.0_scaffold00068.45 0.877696352396287 20 AMTR_s00059p00214550 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP58 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00059.254 0.8763130473185429 27 AMTR_s00011p00092240 Cell cycle.organelle machineries.organelle fission.mitochondrion and peroxisome division.PMD division factor evm_27.TU.AmTr_v1.0_scaffold00011.24 0.8752657239883797 22 AMTR_s00062p00159540 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00062.149 0.8747082783350393 92 AMTR_s00121p00103870 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00121.21 0.8734462670199189 45 AMTR_s00057p00212890 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component RPN1A, ATRPN1A, evm_27.TU.AmTr_v1.0_scaffold00057.266 0.8717651527173441 81 AMTR_s00083p00043340 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase HDA6, RTS1, ATHDA6, SIL1, RPD3B, AXE1, evm_27.TU.AmTr_v1.0_scaffold00083.14 0.8711245081314472 29 AMTR_s00025p00204100 Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00025.262 0.870738687588376 78 AMTR_s00046p00228720 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.DnaK protein HSC70-5, MTHSC70-2, evm_27.TU.AmTr_v1.0_scaffold00046.170 0.8686215950487122 32 AMTR_s00021p00105410 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00021.53 0.868240783096773 76 AMTR_s00107p00047780 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.NUP93 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00107.18 0.8651418086881075 88 AMTR_s00064p00192980 Protein modification.peptide maturation.mitochondrion.MPP mitochondrial signal peptidase heterodimer.beta subunit MPPBETA, evm_27.TU.AmTr_v1.0_scaffold00064.89 0.8646670977235771 83 AMTR_s00069p00132220 RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RS31/40/41 splicing factor At-RS41, RS41, ATRSP41, evm_27.TU.AmTr_v1.0_scaffold00069.94 0.8644389801076021 32 AMTR_s00009p00218530 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS9 component evm_27.TU.AmTr_v1.0_scaffold00009.156 0.8644304558032103 56 AMTR_s00021p00236970 Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana emb1796, evm_27.TU.AmTr_v1.0_scaffold00021.242 0.8637366379739649 71 AMTR_s00019p00256050 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3c component EIF3C, EIF3C-1, ATTIF3C1, TIF3C1, ATEIF3C-1, evm_27.TU.AmTr_v1.0_scaffold00019.448 0.8635627006057005 81 AMTR_s00016p00253700 RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component CBF5, AtCBF5, NAP57, AtNAP57, evm_27.TU.AmTr_v1.0_scaffold00016.317 0.8629454743439307 43 AMTR_s00002p00225030 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.247 0.8611381857939197 75 AMTR_s00024p00180690 Splicing factor-like protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.141 0.8578992659292244 88 AMTR_s00071p00151200 evm_27.TU.AmTr_v1.0_scaffold00071.137 0.8576653594130502 57 AMTR_s00095p00020800 Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.5 0.8547304652590002 88 AMTR_s00009p00218020 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component FIB1, ATFIB1, ATFBR1, FBR1, SKIP7, evm_27.TU.AmTr_v1.0_scaffold00009.155 0.8544738829099524 66 AMTR_s00002p00206060 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3d component evm_27.TU.AmTr_v1.0_scaffold00002.205 0.8534347610492728 50 AMTR_s00005p00263980 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator evm_27.TU.AmTr_v1.0_scaffold00005.216 0.8532136720273362 51 AMTR_s00002p00247340 Chromatin organisation.histone chaperone activities.NAP-type histone chaperone NFA03, NFA3, NAP1;3, evm_27.TU.AmTr_v1.0_scaffold00002.335 0.8525881438446102 52 AMTR_s00016p00157950 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.114 0.8521992505006081 53 AMTR_s00025p00176430 Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.212 0.8519708451044301 64 AMTR_s00002p00165660 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase regulatory protein evm_27.TU.AmTr_v1.0_scaffold00002.139 0.8512470565179657 56 AMTR_s00002p00269670 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component RP1, RPL3A, emb2207, ARP1, evm_27.TU.AmTr_v1.0_scaffold00002.554 0.8490777717237938 60 AMTR_s00060p00174830 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component RP1, RPL3A, emb2207, ARP1, evm_27.TU.AmTr_v1.0_scaffold00060.112 0.8487028052040567 70 AMTR_s00006p00254180 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) evm_27.TU.AmTr_v1.0_scaffold00006.176 0.848637177632736 62 AMTR_s00105p00023120 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL4 component evm_27.TU.AmTr_v1.0_scaffold00105.4 0.8475079301566201 65 AMTR_s00005p00226680 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component NOP56, evm_27.TU.AmTr_v1.0_scaffold00005.101 0.8470541130286628 77 AMTR_s00162p00070130 evm_27.TU.AmTr_v1.0_scaffold00162.30 0.8465358592625394 68 AMTR_s00001p00273100 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst CYP40, SQN, evm_27.TU.AmTr_v1.0_scaffold00001.594 0.8455491368012348 95 AMTR_s00099p00093470 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component FIB1, ATFIB1, ATFBR1, FBR1, SKIP7, evm_27.TU.AmTr_v1.0_scaffold00099.70 0.8452991840614481 71 AMTR_s00107p00082420 DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00107.24 0.8444719335740732 98 AMTR_s00002p00260990 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop58 snoRNP scaffold component evm_27.TU.AmTr_v1.0_scaffold00002.448 0.8441104934070672 74 AMTR_s00066p00162800 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL5 component OLI5, RPL5A, PGY3, ATL5, evm_27.TU.AmTr_v1.0_scaffold00066.175 0.8434660838575211 96 AMTR_s00001p00270600 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00001.466 0.8420578437630009 79 AMTR_s00025p00219610 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter PHT4;6, evm_27.TU.AmTr_v1.0_scaffold00025.306 0.8402689493579734 82 AMTR_s00025p00131080 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3g component ATEIF3G1, EIF3G1, evm_27.TU.AmTr_v1.0_scaffold00025.129 0.8398938039038374 83 AMTR_s00012p00059980 Redox homeostasis.low-molecular-weight scavengers.glutathione metabolism.glutathione degradation.oxoprolinase OXP1, evm_27.TU.AmTr_v1.0_scaffold00012.22 0.8386113335415281 88 AMTR_s00003p00257690 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TPLATE component TPLATE, evm_27.TU.AmTr_v1.0_scaffold00003.321 0.8385201080147326 90 AMTR_s00015p00214470 COP1-interactive protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00015.64 0.8383102719874118 91 AMTR_s00003p00268400 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3b component EIF3B-2, ATEIF3B-2, EIF3B, evm_27.TU.AmTr_v1.0_scaffold00003.398 0.8360534157983848 96 AMTR_s00148p00030810 Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica DRB2, evm_27.TU.AmTr_v1.0_scaffold00148.13 0.8359181920967242 97 AMTR_s00046p00091860 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.NST nucleotide sugar transporter evm_27.TU.AmTr_v1.0_scaffold00046.48 0.8353735338164818 99 AMTR_s00013p00091760 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA3/RH36 assembly factor AtRH36, SWA3, RH36, evm_27.TU.AmTr_v1.0_scaffold00013.42 0.8352807123610607 99 AMTR_s00030p00241220 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NOG1 regulatory GTPase evm_27.TU.AmTr_v1.0_scaffold00030.211 0.834695641918031 100