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  5. AMTR_s00109p00033810

AMTR_s00109p00033810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.22

Description : Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4B large beta subunit


Gene families : OG0001612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00033810

Target Alias Description ECC score Gene Family Method Actions
AT5G11490 No alias adaptin family protein 0.03 OrthoFinder output from all 47 species
Adi_g013457 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078682 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Aev_g02524 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Ala_g15640 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Ala_g16231 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Als_g46996 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.07 OrthoFinder output from all 47 species
Aop_g04473 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Aspi01Gene68426.t1 Aspi01Gene68426 large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Azfi_s0267.g061012 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Cba_g31750 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Ceric.13G014400.1 Ceric.13G014400 large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Ceric.37G056900.1 Ceric.37G056900 large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020592.38 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Cre05.g234665 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.02 OrthoFinder output from all 47 species
Cre11.g478156 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Dac_g03831 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Dcu_g01903 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.07 OrthoFinder output from all 47 species
Dcu_g07725 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
GSVIVT01019391001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
LOC_Os01g43630.1 LOC_Os01g43630 large subunit beta of AP-4 vacuole cargo adaptor complex 0.08 OrthoFinder output from all 47 species
LOC_Os03g23950.1 LOC_Os03g23950 large subunit beta of AP-1 trans-Golgi network cargo... 0.08 OrthoFinder output from all 47 species
Lfl_g02298 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.07 OrthoFinder output from all 47 species
Lfl_g05633 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
MA_10436050g0010 No alias Beta-adaptin-like protein C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g25810.1 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Mp6g09050.1 No alias large subunit beta of AP-4 vacuole cargo adaptor complex 0.04 OrthoFinder output from all 47 species
Msp_g00711 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Nbi_g10984 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Pir_g09755 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Pir_g11812 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005044 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013913 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Smo269184 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Smo269763 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder output from all 47 species
Solyc08g068210.3.1 Solyc08g068210 large subunit beta of AP-4 vacuole cargo adaptor complex 0.07 OrthoFinder output from all 47 species
Solyc08g081320.3.1 Solyc08g081320 large subunit beta of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Spa_g12477 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Zm00001e001693_P001 Zm00001e001693 large subunit beta of AP-1 trans-Golgi network cargo... 0.1 OrthoFinder output from all 47 species
Zm00001e020411_P002 Zm00001e020411 large subunit beta of AP-4 vacuole cargo adaptor complex 0.05 OrthoFinder output from all 47 species
Zm00001e027916_P001 Zm00001e027916 large subunit beta of AP-4 vacuole cargo adaptor complex 0.11 OrthoFinder output from all 47 species
Zm00001e038184_P001 Zm00001e038184 large subunit beta of AP-1 trans-Golgi network cargo... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030131 clathrin adaptor complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 36 549
IPR015151 B-adaptin_app_sub_C 713 827
No external refs found!