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  5. AMTR_s00104p00026540

AMTR_s00104p00026540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00104.2

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00104p00026540

Target Alias Description ECC score Gene Family Method Actions
AT1G48100 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G14650 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g112354 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32139 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14084 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44829.t1 Aspi01Gene44829 EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0030.g024436 No alias EC_3.2 glycosylase & original description: CDS=1-1320 0.02 OrthoFinder output from all 47 species
Ceric.20G025000.1 Ceric.20G025000 EC_3.2 glycosylase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11602 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032114001 QRT2 Polygalacturonase OS=Actinidia deliciosa 0.05 OrthoFinder output from all 47 species
GSVIVT01032117001 QRT2 Cell wall.pectin.modification and... 0.07 OrthoFinder output from all 47 species
GSVIVT01033303001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01038447001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g19170.1 LOC_Os01g19170 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g23790.1 LOC_Os08g23790 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 OrthoFinder output from all 47 species
Lfl_g19271 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431579g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.02 OrthoFinder output from all 47 species
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sam_g15323 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g014560.3.1 Solyc08g014560 Polygalacturonase OS=Prunus persica... 0.03 OrthoFinder output from all 47 species
Solyc10g047570.2.1 Solyc10g047570 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 OrthoFinder output from all 47 species
Solyc12g009420.3.1 QRT2, Solyc12g009420 Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e006091_P001 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.02 OrthoFinder output from all 47 species
Zm00001e026240_P001 Zm00001e026240 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e032294_P001 Zm00001e032294 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 226 463
IPR000743 Glyco_hydro_28 44 166
No external refs found!