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  5. AMTR_s00102p00131940

AMTR_s00102p00131940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00102.72

Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.QRT3 polygalacturonase


Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00102p00131940

Target Alias Description ECC score Gene Family Method Actions
AT4G20050 QRT3 Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aop_g67503 QRT3 polygalacturonase *(QRT3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G028400.1 QRT3, Ceric.21G028400 polygalacturonase *(QRT3) & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g31759 QRT3 polygalacturonase *(QRT3) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01012139001 QRT3 Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
Len_g14675 QRT3 polygalacturonase *(QRT3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44003 QRT3 polygalacturonase *(QRT3) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40884 No alias polygalacturonase *(QRT3) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g068400.3.1 QRT3, Solyc02g068400 polygalacturonase (QRT3) 0.03 OrthoFinder output from all 47 species
Spa_g38130 QRT3 polygalacturonase *(QRT3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006958_P005 QRT3, Zm00001e006958 polygalacturonase (QRT3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!