AMTR_s00101p00137160 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00101.114

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED26 component

Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00101p00137160

Target	Alias	Description	ECC score	Gene Family Method
AT5G05140	No alias	Transcription elongation factor (TFIIS) family protein	0.04	OrthoFinder output from all 47 species
Adi_g008654	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g107706	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g07755	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14915	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Als_g29178	No alias	component *(MED26) of MEDIATOR transcription...	0.04	OrthoFinder output from all 47 species
Aob_g07318	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Aspi01Gene30064.t1	Aspi01Gene30064	component *(MED26) of MEDIATOR transcription...	0.04	OrthoFinder output from all 47 species
Aspi01Gene69253.t1	Aspi01Gene69253	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Cba_g16447	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Cba_g37242	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Cba_g69237	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Ceric.15G055300.1	Ceric.15G055300	component *(MED26) of MEDIATOR transcription...	0.05	OrthoFinder output from all 47 species
Ceric.22G058100.1	Ceric.22G058100	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Dde_g00740	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g04413	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
GSVIVT01025776001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
LOC_Os05g34210.1	LOC_Os05g34210	component MED26 of MEDIATOR transcription co-activator complex	0.03	OrthoFinder output from all 47 species
LOC_Os07g44820.1	LOC_Os07g44820	component MED26 of MEDIATOR transcription co-activator complex	0.01	OrthoFinder output from all 47 species
LOC_Os11g06650.1	LOC_Os11g06650	Probable mediator of RNA polymerase II transcription...	0.01	OrthoFinder output from all 47 species
Msp_g35835	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Nbi_g27629	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Pir_g50976	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005285	No alias	not classified & original description: CDS=297-1337	0.02	OrthoFinder output from all 47 species
Solyc11g005450.3.1	Solyc11g005450	Probable mediator of RNA polymerase II transcription...	0.02	OrthoFinder output from all 47 species
Spa_g38133	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Tin_g01070	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e010865_P001	Zm00001e010865	component MED26 of MEDIATOR transcription co-activator complex	0.02	OrthoFinder output from all 47 species
Zm00001e017420_P001	Zm00001e017420	component MED26 of MEDIATOR transcription co-activator complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003995	acyl-CoA dehydrogenase activity	IEP	HCCA
MF	GO:0003997	acyl-CoA oxidase activity	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015693	magnesium ion transport	IEP	HCCA
BP	GO:0016042	lipid catabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016833	oxo-acid-lyase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0030258	lipid modification	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034440	lipid oxidation	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0048037	obsolete cofactor binding	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0052890	oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017923	TFIIS_N	145	195

External Links

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AMTR_s00101p00137160 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation