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  5. AMTR_s00101p00121540

AMTR_s00101p00121540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00101.95

Description : PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00101p00121540
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT3G56650 No alias Mog1/PsbP/DUF1795-like photosystem II reaction center... 0.1 OrthoFinder output from all 47 species
Adi_g015482 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g02932 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g00819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14409 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g02884 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13163 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0005.g009335 No alias not classified & original description: CDS=1-810 0.04 OrthoFinder output from all 47 species
Ceric.39G037400.1 Ceric.39G037400 not classified & original description: pacid=50583235... 0.08 OrthoFinder output from all 47 species
Cre06.g280150 No alias PsbP domain-containing protein 6, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g31306 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g00607 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g25294 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g00686 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
GSVIVT01025792001 No alias PsbP domain-containing protein 6, chloroplastic... 0.08 OrthoFinder output from all 47 species
LOC_Os01g59090.1 LOC_Os01g59090 PsbP domain-containing protein 6, chloroplastic... 0.08 OrthoFinder output from all 47 species
Len_g07272 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g12167 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_478623g0010 No alias PsbP domain-containing protein 6, chloroplastic... 0.05 OrthoFinder output from all 47 species
Mp8g10770.1 No alias PsbP domain-containing protein 6, chloroplastic... 0.06 OrthoFinder output from all 47 species
Msp_g47911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07469 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g09687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27494 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g65891 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g61363 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g17541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo144149 No alias PsbP domain-containing protein 6, chloroplastic... 0.04 OrthoFinder output from all 47 species
Solyc06g065490.3.1 Solyc06g065490 PsbP domain-containing protein 6, chloroplastic... 0.12 OrthoFinder output from all 47 species
Spa_g17127 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g21578 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e019532_P001 Zm00001e019532 PsbP domain-containing protein 6, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005960 glycine cleavage complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 153 313
No external refs found!