AMTR_s00099p00093470 (FIB1, ATFIB1, ATFBR1,...)

Aliases : FIB1, ATFIB1, ATFBR1, FBR1, SKIP7, evm_27.TU.AmTr_v1.0_scaffold00099.70

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component

Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00099p00093470

Target	Alias	Description	ECC score	Gene Family Method
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.03	OrthoFinder output from all 47 species
Adi_g053094	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.02	OrthoFinder output from all 47 species
Ala_g04107	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Aop_g18685	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Aspi01Gene12556.t1	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.04	OrthoFinder output from all 47 species
Ceric.01G068400.1	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.05	OrthoFinder output from all 47 species
Dac_g15986	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Dcu_g15289	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.04	OrthoFinder output from all 47 species
Gb_33899	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
Len_g49993	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.05	OrthoFinder output from all 47 species
MA_124463g0010	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	OrthoFinder output from all 47 species
Mp2g12880.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
Msp_g29062	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Ore_g33661	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.02	OrthoFinder output from all 47 species
Sam_g13274	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.02	OrthoFinder output from all 47 species
Solyc03g025270.3.1	FIB2, ATFIB2,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
Spa_g31178	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.05	OrthoFinder output from all 47 species
Tin_g21591	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Zm00001e023572_P001	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	9	236

External Links

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AMTR_s00099p00093470 (FIB1, ATFIB1, ATFBR1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation