Aliases : YAB5, evm_27.TU.AmTr_v1.0_scaffold00096.22
Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.YABBY transcription factor
Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00096p00054100 | |
Cluster | HCCA: Cluster_70 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
LOC_Os03g11600.1 | CRC, LOC_Os03g11600 | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g010240.3.1 | CRC, Solyc01g010240 | transcription factor (YABBY) | 0.02 | OrthoFinder output from all 47 species | |
Solyc06g073920.3.1 | YAB2, Solyc06g073920 | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
Tin_g42084 | No alias | transcription factor *(YABBY) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e003268_P003 | AFO, YAB1, FIL,... | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e012387_P001 | YAB5, Zm00001e012387 | transcription factor (YABBY) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e012388_P001 | YAB5, Zm00001e012388 | transcription factor (YABBY) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e017951_P002 | YAB5, Zm00001e017951 | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e032845_P002 | YAB2, Zm00001e032845 | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e041322_P001 | AFO, YAB1, FIL,... | transcription factor (YABBY) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004857 | enzyme inhibitor activity | IEP | HCCA |
BP | GO:0006855 | xenobiotic transmembrane transport | IEP | HCCA |
MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
MF | GO:0015297 | antiporter activity | IEP | HCCA |
MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
BP | GO:0042545 | cell wall modification | IEP | HCCA |
BP | GO:0042908 | xenobiotic transport | IEP | HCCA |
BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071555 | cell wall organization | IEP | HCCA |
MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
MF | GO:0140678 | molecular function inhibitor activity | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006780 | YABBY | 6 | 163 |
No external refs found! |