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  5. AMTR_s00095p00139840

AMTR_s00095p00139840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00095.102

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00095p00139840

Target Alias Description ECC score Gene Family Method Actions
Aob_g11499 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02048 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre01.g022350 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g46202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g43140.1 LOC_Os04g43140 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ore_g32798 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 553 627
IPR000490 Glyco_hydro_17 824 884
IPR011545 DEAD/DEAH_box_helicase_dom 232 454
No external refs found!