AMTR_s00091p00072780 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00091.20

No description available

Gene families : OG0012187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012187_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00091p00072780

Target	Alias	Description	ECC score	Gene Family Method
AT1G14900	HMGA	high mobility group A	0.04	OrthoFinder output from all 47 species
GSVIVT01011701001	HMGA	HMG-Y-related protein A OS=Zea mays	0.03	OrthoFinder output from all 47 species
Solyc04g007890.3.1	HMGA, Solyc04g007890	HMG-Y-related protein A OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Solyc05g051290.4.1	HMGA, Solyc05g051290	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc11g011160.1.1	HMGA, Solyc11g011160	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e004163_P001	HMGA, Zm00001e004163	HMG-Y-related protein A OS=Zea mays...	0.04	OrthoFinder output from all 47 species
Zm00001e034077_P001	Zm00001e034077	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017956	AT_hook_DNA-bd_motif	149	157
IPR017956	AT_hook_DNA-bd_motif	173	184
IPR017956	AT_hook_DNA-bd_motif	105	116
IPR017956	AT_hook_DNA-bd_motif	124	132
IPR017956	AT_hook_DNA-bd_motif	188	196
IPR005818	Histone_H1/H5_H15	1	62

External Links

No external refs found!