Aliases : evm_27.TU.AmTr_v1.0_scaffold00090.29
Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp22 RNA helicase
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G26370 | No alias | RNA helicase family protein | 0.03 | OrthoFinder output from all 47 species | |
AT3G62310 | No alias | RNA helicase family protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g014958 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g27800 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g38553 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g01897 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g01347 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ceric.04G078700.1 | Ceric.04G078700 | not classified & original description: pacid=50630845... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.21G075900.1 | EMB3011, Ceric.21G075900 | RNA helicase *(Prp16) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.25G032700.1 | Ceric.25G032700 | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.37G064800.1 | ESP3, EMB2733,... | RNA helicase *(Prp2) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000842.2 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020531.53 | EMB3011 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021589.28 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00022075.25 | No alias | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder output from all 47 species | |
Cre06.g266383 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
Cre07.g349100 | ESP3, EMB2733 | RNA processing.RNA splicing.spliceosome... | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g13249 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g20664 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g22478 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g42294 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g07449 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g08449 | No alias | RNA helicase *(Prp22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01010362001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Gb_30670 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os01g11370.1 | LOC_Os01g11370 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os06g09280.1 | LOC_Os06g09280 | RNA helicase (Prp22) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os11g20554.1 | LOC_Os11g20554 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
Len_g08915 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Len_g09738 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g03223 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_10428112g0030 | FAS4, ATFAS4 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
MA_10430150g0010 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Mp3g17320.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Mp4g02780.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Mp4g16380.1 | ESP3, EMB2733 | RNA helicase (Prp2) | 0.02 | OrthoFinder output from all 47 species | |
Msp_g14081 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g42980 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g42990 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g15013 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0002.g001017 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0039.g012085 | No alias | not classified & original description: CDS=161-2176 | 0.02 | OrthoFinder output from all 47 species | |
Sam_g06275 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g25079 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc03g115390.4.1 | ESP3, EMB2733,... | RNA helicase (Prp2) | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g015040.4.1 | Solyc05g015040 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
Solyc07g039550.4.1 | Solyc07g039550 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g008120.4.1 | Solyc09g008120 | RNA helicase (Prp22) | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g097820.3.1 | Solyc09g097820 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g01282 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g14924 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g28400 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e036358_P005 | Zm00001e036358 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | HCCA |
MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | HCCA |
CC | GO:0005694 | chromosome | IEP | HCCA |
BP | GO:0005996 | monosaccharide metabolic process | IEP | HCCA |
BP | GO:0006006 | glucose metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006265 | DNA topological change | IEP | HCCA |
BP | GO:0006304 | DNA modification | IEP | HCCA |
BP | GO:0006305 | DNA alkylation | IEP | HCCA |
BP | GO:0006306 | DNA methylation | IEP | HCCA |
BP | GO:0006497 | protein lipidation | IEP | HCCA |
BP | GO:0006505 | GPI anchor metabolic process | IEP | HCCA |
BP | GO:0006506 | GPI anchor biosynthetic process | IEP | HCCA |
BP | GO:0006643 | membrane lipid metabolic process | IEP | HCCA |
BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | HCCA |
BP | GO:0006664 | glycolipid metabolic process | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
BP | GO:0009247 | glycolipid biosynthetic process | IEP | HCCA |
BP | GO:0019318 | hexose metabolic process | IEP | HCCA |
CC | GO:0031227 | obsolete intrinsic component of endoplasmic reticulum membrane | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044728 | DNA methylation or demethylation | IEP | HCCA |
BP | GO:0045017 | glycerolipid biosynthetic process | IEP | HCCA |
BP | GO:0046467 | membrane lipid biosynthetic process | IEP | HCCA |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | HCCA |
BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0071103 | DNA conformation change | IEP | HCCA |
BP | GO:1903509 | liposaccharide metabolic process | IEP | HCCA |
No external refs found! |