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  5. AMTR_s00089p00081270

AMTR_s00089p00081270 (PI,...)


Aliases : PI, evm_27.TU.AmTr_v1.0_scaffold00089.36

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00089p00081270
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00181740 AGL7, AP1,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.06 OrthoFinder output from all 47 species
AT2G22630 AGL17 AGAMOUS-like 17 0.02 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT3G57390 AGL18 AGAMOUS-like 18 0.02 OrthoFinder output from all 47 species
AT4G37435 No alias No description available 0.03 OrthoFinder output from all 47 species
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.06 OrthoFinder output from all 47 species
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g045544 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106519 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116631 AGL65 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38807 AGL91 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27230 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15812.t2 AGL13, Aspi01Gene15812 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15816.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17800.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17819.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene68989.t2 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0684.g082058 AGL21 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.07G004300.1 AGL10, CAL1,... not classified & original description: pacid=50627317... 0.02 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.16G027500.1 AGL16, Ceric.16G027500 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.36G037100.1 AGL13, Ceric.36G037100 not classified & original description: pacid=50568619... 0.02 OrthoFinder output from all 47 species
Ceric.39G001800.1 AGL104, Ceric.39G001800 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g25334 AGL4, SEP2 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25491 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07325 AGL8, FUL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07431 AGL6 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10207 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21427 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01002442001 AGL24 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01006592001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008139001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008806001 PI RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01012110001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01012250001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01018450001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01025945001 STK, AGL11 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01026207001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01027577001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01033253001 AGL15 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Gb_03068 AGL16 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Gb_16301 STK, AGL11 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Gb_19897 AGL16 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
LOC_Os01g11510.1 LOC_Os01g11510 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os01g66030.1 PI, LOC_Os01g66030 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os01g66290.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g23980.1 AGL16, LOC_Os06g23980 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
LOC_Os09g32948.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os12g10540.3 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Len_g20789 SHP2, AGL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22235 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g38111 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41375 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56241 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16826 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16827 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29215 AGL42 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36481 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37644 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_138440g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_16629g0010 ANR1, AGL44 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_175522g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_19007g0020 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_333471g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_34737g0010 AGL17 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_347547g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_5917g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.05 OrthoFinder output from all 47 species
MA_78010g0010 SHP2, AGL5 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_8748850g0010 AGL24 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_9841429g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Msp_g06052 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26027 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04651 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44138 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g46921 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51490 AGL24 regulatory protein *(SVP/AGL24) of floral meristem... 0.02 OrthoFinder output from all 47 species
Pir_g54533 MAF2, AGL31 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60105 AGL18 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25142 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30258 AGL15 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60352 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006240 No alias not classified & original description: CDS=1-240 0.03 OrthoFinder output from all 47 species
Sam_g09455 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15459 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36311 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48748 No alias MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g48749 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo121275 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc02g089210.4.1 AGL7, AP1, Solyc02g089210 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc03g006830.3.1 AGL42, Solyc03g006830 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc06g059970.4.1 PI, Solyc06g059970 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
Solyc10g044965.1.1 AGL21, Solyc10g044965 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc12g038510.2.1 AGL4, SEP2,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g26308 AGL15 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g31312 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45506 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55783 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005708_P002 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e006950_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e010125_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e013738_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e015728_P001 AGL16, Zm00001e015728 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e015924_P003 SVP, AGL22,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e016529_P004 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e018811_P001 AGL14, Zm00001e018811 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e027031_P001 PI, Zm00001e027031 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e027034_P001 PI, Zm00001e027034 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e036159_P001 AGL24, Zm00001e036159 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e039774_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 9 59
IPR002487 TF_Kbox 71 165
No external refs found!