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  5. AMTR_s00088p00137910

AMTR_s00088p00137910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.106

Description : Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006772_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00137910
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Aev_g06441 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g01030 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.24G080200.1 Ceric.24G080200 not classified & original description: pacid=50629864... 0.02 OrthoFinder output from all 47 species
Dcu_g21210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g00613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08701 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e041886_P001 Zm00001e041886 Uncharacterized protein At5g50100, chloroplastic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007263 DCC1-like 79 189
No external refs found!