AMTR_s00088p00087630 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.53

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1G large gamma subunit

Gene families : OG0002603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002603_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00088p00087630

Target	Alias	Description	ECC score	Gene Family Method
Aev_g07309	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Mp2g02140.1	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Nbi_g04417	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Ore_g15695	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Pp3c8_5790V3.1	Pp3c8_5790	Adaptor protein complex AP-1, gamma subunit	0.03	OrthoFinder output from all 47 species
Solyc04g025870.4.1	Solyc04g025870	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Zm00001e030101_P002	Zm00001e030101	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Zm00001e036396_P001	Zm00001e036396	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0030119	AP-type membrane coat adaptor complex	None	Extended
CC	GO:0030131	clathrin adaptor complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008152	Clathrin_a/b/g-adaptin_app_Ig	769	881
IPR002553	Clathrin/coatomer_adapt-like_N	21	571

External Links

No external refs found!