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Aliases : OTP86, evm_27.TU.AmTr_v1.0_scaffold00084.24
Description : Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00084p00089150 | |
| Cluster | HCCA: Cluster_78 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G02010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G37170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G27110 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g002434 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g036547 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g067784 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g096231 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g099319 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g102361 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g27648 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g17036 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g27565 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g36188 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g03222 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g07129 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g07425 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g18499 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g18892 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g46291 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g05250 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g07355 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g26948 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene10587.t1 | CRR2, Aspi01Gene10587 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene27322.t1 | Aspi01Gene27322 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene28051.t2 | OSB3, Aspi01Gene28051 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene51735.t1 | Aspi01Gene51735 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene63595.t1 | EMB2261, Aspi01Gene63595 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0059.g034666 | No alias | not classified & original description: CDS=1-1770 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0068.g036422 | No alias | not classified & original description: CDS=1-2670 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0095.g043572 | No alias | not classified & original description: CDS=1-2958 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0210.g058082 | No alias | not classified & original description: CDS=1-2637 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0652.g081079 | No alias | not classified & original description: CDS=1-2169 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g04634 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g06497 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g07421 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g13627 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g19913 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20681 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g21792 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g34537 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g34577 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g34773 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g35174 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g35199 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g68679 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g72789 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.13G001600.1 | Ceric.13G001600 | not classified & original description: pacid=50636694... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08906 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g08678 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g09625 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g16795 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g22018 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22168 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g28695 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g40545 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g12101 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g15341 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g19239 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g20660 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g31027 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008656001 | No alias | Pentatricopeptide repeat-containing protein At5g50990... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025639001 | No alias | Pentatricopeptide repeat-containing protein At3g53360,... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_02379 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_02573 | CRR22 | Pentatricopeptide repeat-containing protein At2g22070... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_06568 | REME1 | Pentatricopeptide repeat-containing protein At2g03880,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_08671 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_25046 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_31319 | OTP84 | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_33328 | CRR22 | Pentatricopeptide repeat-containing protein At4g13650... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g56850.1 | LOC_Os03g56850 | Pentatricopeptide repeat-containing protein At4g21300... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g41040.1 | LOC_Os06g41040 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os08g33700.1 | LOC_Os08g33700 | Pentatricopeptide repeat-containing protein At3g47530... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g39130.1 | LOC_Os08g39130 | Pentatricopeptide repeat-containing protein At2g29760,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os08g40020.1 | MEF19, LOC_Os08g40020 | RNA editing factor (MEF19) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g03881 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g04367 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g05389 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18252 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g18947 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g22919 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g23407 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g24399 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g15171 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g19657 | CRR2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_10429837g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_114722g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_119635g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| MA_131437g0010 | No alias | RNA editing factor (MEF3) | 0.03 | OrthoFinder output from all 47 species | |
| MA_174226g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | OrthoFinder output from all 47 species | |
| MA_20585g0020 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| MA_2991g0010 | No alias | RNA editing factor (MEF12) | 0.03 | OrthoFinder output from all 47 species | |
| MA_3449g0010 | CRR22 | Pentatricopeptide repeat-containing protein At2g22070... | 0.02 | OrthoFinder output from all 47 species | |
| MA_483636g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| MA_597g0020 | DOT4 | Pentatricopeptide repeat-containing protein At4g02750... | 0.04 | OrthoFinder output from all 47 species | |
| MA_681272g0010 | CRR2 | Pentatricopeptide repeat-containing protein At3g46790,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_905781g0010 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.03 | OrthoFinder output from all 47 species | |
| MA_9463538g0010 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g27086 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g28341 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g28789 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g35976 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g44842 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g02979 | PTAC9, OSB2 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g07300 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19382 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g20095 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g28389 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g34092 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g10265 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g13050 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g03120 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g03353 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g03469 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g04505 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g04516 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g06866 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g15493 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g15703 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g15725 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g16126 | CRR2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g16162 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g16163 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g18774 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g20888 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g22838 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g23601 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g25064 | CRR22 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g25269 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g26070 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g26402 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g29834 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g29840 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g29945 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30310 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30634 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30997 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g02982 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g06960 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g41025 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g46657 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g53563 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g56081 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g59292 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g59297 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g61335 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0133.g022243 | No alias | not classified & original description: CDS=1-1908 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g06616 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g11676 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g11900 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g34625 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g37160 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g37186 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g069500.1.1 | Solyc02g069500 | Pentatricopeptide repeat-containing protein At4g21300... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g119120.3.1 | Solyc03g119120 | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g053850.4.1 | Solyc06g053850 | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g084580.1.1 | Solyc06g084580 | Pentatricopeptide repeat-containing protein At4g20770... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g009790.4.1 | Solyc09g009790 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g009950.4.1 | Solyc09g009950 | RNA editing factor (MEF10) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g010070.1.1 | EMB2758, Solyc09g010070 | Pentatricopeptide repeat-containing protein At4g33990... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g26279 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g44822 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g51293 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g05656 | DOT4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g06127 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e031660_P001 | Zm00001e031660 | Pentatricopeptide repeat-containing protein At4g14170... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e035654_P001 | EMB2758, Zm00001e035654 | Pentatricopeptide repeat-containing protein At4g33990... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 182 | 208 |
| IPR002885 | Pentatricopeptide_repeat | 559 | 585 |
| IPR002885 | Pentatricopeptide_repeat | 588 | 618 |
| IPR002885 | Pentatricopeptide_repeat | 489 | 515 |
| IPR002885 | Pentatricopeptide_repeat | 154 | 175 |
| IPR002885 | Pentatricopeptide_repeat | 625 | 650 |
| IPR002885 | Pentatricopeptide_repeat | 386 | 407 |
| IPR002885 | Pentatricopeptide_repeat | 286 | 314 |
| IPR002885 | Pentatricopeptide_repeat | 257 | 284 |
| IPR002885 | Pentatricopeptide_repeat | 661 | 684 |
| IPR002885 | Pentatricopeptide_repeat | 84 | 127 |
| No external refs found! |