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  5. AMTR_s00082p00053170

AMTR_s00082p00053170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00082.2

No description available


Gene families : OG0001079 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00082p00053170
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g074449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080539 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g093065 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23754 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene46928.t1 Aspi01Gene46928 E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11772 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G096500.1 Ceric.14G096500 E4 polyubiquitination factor *(UAP) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g04951 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020546001 No alias No description available 0.02 OrthoFinder output from all 47 species
MA_10428704g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g26880 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16375 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14776 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28018 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0098.g019490 No alias E4 polyubiquitination factor *(UAP) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g086520.3.1 Solyc02g086520 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc12g035240.2.1 Solyc12g035240 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR010820 DUF1421 279 537
IPR010820 DUF1421 159 202
No external refs found!