1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00081p00156000

AMTR_s00081p00156000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00081.66

Description : F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana


Gene families : OG0000469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00081p00156000

Target Alias Description ECC score Gene Family Method Actions
Aev_g03987 SKIP4 substrate adaptor of SCF E3 ubiquitin ligase *(AFR) &... 0.02 OrthoFinder output from all 47 species
Ala_g14705 SKIP6 substrate adaptor *(SKIP6) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aob_g12305 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13901.t1 Aspi01Gene13901 substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cba_g00947 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.03G072000.1 Ceric.03G072000 not classified & original description: pacid=50571900... 0.03 OrthoFinder output from all 47 species
Gb_06675 No alias F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Gb_07972 No alias F-box/kelch-repeat protein At1g55270 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_919958g0010 SKIP6 F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Mp3g08140.1 No alias phenylpropanoid biosynthesis regulator (SAGL1) 0.02 OrthoFinder output from all 47 species
Pnu_g03836 No alias substrate adaptor *(SKIP30) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Sam_g29768 No alias substrate adaptor *(SKIP4) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR006652 Kelch_1 48 87
IPR006652 Kelch_1 90 137
No external refs found!