Sequence Description Alias PCC hrr AMTR_s00056p00036030 RNA biosynthesis.transcriptional repression.AFP/NINJA transcriptional co-repressor NINJA, evm_27.TU.AmTr_v1.0_scaffold00056.20 0.8962794459284806 2 AMTR_s00165p00079470 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP1 phosphatase TOPP4, evm_27.TU.AmTr_v1.0_scaffold00165.51 0.8893301877929415 2 AMTR_s00101p00147880 Lipid metabolism.galactolipid and sulfolipid synthesis.digalactosyldiacylglycerol synthase DGD2, evm_27.TU.AmTr_v1.0_scaffold00101.122 0.8811336565674299 3 AMTR_s00009p00261830 Phytohormones.brassinosteroid.perception and signal transduction.receptor complex.receptor kinase regulator protein (MSBP) ATMP2, ATMAPR3, MAPR3, MSBP2, evm_27.TU.AmTr_v1.0_scaffold00009.339 0.8694859473450978 5 AMTR_s00110p00098100 evm_27.TU.AmTr_v1.0_scaffold00110.59 0.8670425099012267 5 AMTR_s00029p00205680 DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica RH8, ATRH8, evm_27.TU.AmTr_v1.0_scaffold00029.296 0.8662946019505726 14 AMTR_s00129p00081030 Protein degradation.26S proteasome.20S core protease.alpha-type subunits.alpha type-5 component PAE2, evm_27.TU.AmTr_v1.0_scaffold00129.58 0.8649479218983325 11 AMTR_s00156p00043680 evm_27.TU.AmTr_v1.0_scaffold00156.20 0.861743108258228 9 AMTR_s00140p00087970 RNA biosynthesis.transcriptional activation.NAC transcription factor anac078, NAC2, evm_27.TU.AmTr_v1.0_scaffold00140.39 0.8579060925245002 9 AMTR_s00002p00223990 evm_27.TU.AmTr_v1.0_scaffold00002.244 0.8554532358316336 10 AMTR_s00009p00223610 Vesicle trafficking.autophagosome formation.cargo recruitment.ATI1/2 autophagic adapter protein evm_27.TU.AmTr_v1.0_scaffold00009.170 0.8540810134398167 11 AMTR_s00084p00172980 Vesicle trafficking.endomembrane trafficking.ESCRT (Endosomal Sorting Complex Required for Transport) complexes.ESCRT-III complex.FREE1 associated protein evm_27.TU.AmTr_v1.0_scaffold00084.46 0.8535715400025947 12 AMTR_s00044p00012740 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.F-class RAB GTPase RABF2B, ATRAB-F2B, RAB-F2B, ATRABF2B, ARA7, ARA-7, ATRAB5B, evm_27.TU.AmTr_v1.0_scaffold00044.1 0.8517271104625134 13 AMTR_s00019p00091080 evm_27.TU.AmTr_v1.0_scaffold00019.67 0.8496557470243353 14 AMTR_s00029p00143630 Protein modification.protein folding and quality control.NAC ribosome-associated chaperone complex.beta subunit evm_27.TU.AmTr_v1.0_scaffold00029.167 0.8492901599234115 15 AMTR_s00069p00158470 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN11 regulatory component evm_27.TU.AmTr_v1.0_scaffold00069.131 0.8473888446305571 22 AMTR_s00114p00053290 evm_27.TU.AmTr_v1.0_scaffold00114.19 0.8448724385570477 17 AMTR_s00001p00271430 Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana PFU2, UBC23, evm_27.TU.AmTr_v1.0_scaffold00001.488 0.8439688240319743 35 AMTR_s00142p00104490 evm_27.TU.AmTr_v1.0_scaffold00142.68 0.8430727858220967 29 AMTR_s00022p00124240 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.pre-60S subunit nuclear export.NMD3 export factor evm_27.TU.AmTr_v1.0_scaffold00022.116 0.8426626641783034 20 AMTR_s00019p00206980 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.246 0.842162023451972 52 AMTR_s00154p00032290 Vesicle trafficking.target membrane tethering.Exocyst complex.EXO70 component ATEXO70F1, EXO70F1, evm_27.TU.AmTr_v1.0_scaffold00154.13 0.8387620626033683 23 AMTR_s00071p00157830 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor cICDH, evm_27.TU.AmTr_v1.0_scaffold00071.147 0.8366214901068265 24 AMTR_s00024p00176520 Protein modification.phosphorylation.CK kinase superfamily.MLK protein kinase evm_27.TU.AmTr_v1.0_scaffold00024.135 0.8357953564427208 69 AMTR_s00036p00181640 Protein biosynthesis.translation initiation.mRNA loading.eIF4A mRNA unwinding factor EIF4A-2, evm_27.TU.AmTr_v1.0_scaffold00036.91 0.8355811221761805 37 AMTR_s00147p00090390 Protein degradation.26S proteasome.20S core protease.alpha-type subunits.alpha type-1 component PAA2, evm_27.TU.AmTr_v1.0_scaffold00147.47 0.8336192485299637 58 AMTR_s00147p00043750 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins IMPA-1, IMPA1, AT-IMP, ATKAP ALPHA, AIMP ALPHA, evm_27.TU.AmTr_v1.0_scaffold00147.17 0.8333274856341977 63 AMTR_s00019p00254960 Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.437 0.8330407826763984 29 AMTR_s00055p00205880 Secondary metabolism.nitrogen-containing secondary compounds.betaines.betaine synthesis.betaine-aldehyde dehydrogenase ALDH10A9, evm_27.TU.AmTr_v1.0_scaffold00055.145 0.8318940565831506 53 AMTR_s00030p00184390 Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.117 0.8301197487702187 31 AMTR_s00061p00064900 evm_27.TU.AmTr_v1.0_scaffold00061.39 0.8289739477811435 32 AMTR_s00017p00221160 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS10 component evm_27.TU.AmTr_v1.0_scaffold00017.170 0.8287318355516498 67 AMTR_s00033p00175020 Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.124 0.8284764765498821 35 AMTR_s00072p00025620 Coenzyme metabolism.iron-sulfur cluster assembly machineries.mitochondrial ISC system.assembly phase.frataxin component ATFH, FH, evm_27.TU.AmTr_v1.0_scaffold00072.4 0.8272896582946305 53 AMTR_s00063p00200790 U-box domain-containing protein 11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00063.79 0.8261042201699821 37 AMTR_s00032p00133570 Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor LOS1, evm_27.TU.AmTr_v1.0_scaffold00032.93 0.824079296656641 38 AMTR_s00040p00135180 Cell cycle.organelle machineries.organelle fission.mitochondrion and peroxisome division.NETWORK/ELM1 mitochondrial fission factor ELM1, evm_27.TU.AmTr_v1.0_scaffold00040.103 0.8239616471688097 39 AMTR_s00002p00272130 RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.CDC73/PHP component CDC73, PHP, evm_27.TU.AmTr_v1.0_scaffold00002.665 0.8238430096584466 40 AMTR_s00049p00049960 ABC transporter F family member 4 OS=Arabidopsis thaliana ATGCN4, GCN4, evm_27.TU.AmTr_v1.0_scaffold00049.22 0.8235529572346677 41 AMTR_s00072p00034700 Universal stress protein PHOS32 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.7 0.8233785115124943 55 AMTR_s00118p00074890 Amino acid metabolism.degradation.aromatic amino acid.aromatic-amino-acid aminotransferase evm_27.TU.AmTr_v1.0_scaffold00118.14 0.8224085391897069 44 AMTR_s00025p00054190 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.MBD7 ROS1-recruitment complex.IDM2/IDM3 component evm_27.TU.AmTr_v1.0_scaffold00025.30 0.822135435575527 45 AMTR_s00059p00119420 Solute transport.porins.OEP24 outer membrane porin evm_27.TU.AmTr_v1.0_scaffold00059.93 0.8205113920249388 46 AMTR_s00156p00078120 Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica RAD23D, evm_27.TU.AmTr_v1.0_scaffold00156.38 0.8201711699300203 80 AMTR_s00017p00243480 evm_27.TU.AmTr_v1.0_scaffold00017.221 0.8189419607978757 48 AMTR_s00068p00196240 ECT8, evm_27.TU.AmTr_v1.0_scaffold00068.160 0.8186803631758095 49 AMTR_s00013p00055400 evm_27.TU.AmTr_v1.0_scaffold00013.18 0.8176171723893415 50 AMTR_s00095p00075330 Leucine-rich repeat protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.42 0.8174963497437118 73 AMTR_s00048p00118270 Vesicle trafficking.endomembrane trafficking.protein recycling.ubiquitylated cargo adaptors.TOM associated protein evm_27.TU.AmTr_v1.0_scaffold00048.61 0.8173592298411105 52 AMTR_s00077p00161980 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT3 regulatory component RPT3, evm_27.TU.AmTr_v1.0_scaffold00077.168 0.8166634018023021 53 AMTR_s00009p00207050 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00009.134 0.8152962385073982 56 AMTR_s00013p00198120 Vesicle trafficking.target membrane tethering.Exocyst complex.EXO70 component ATEXO70F1, EXO70F1, evm_27.TU.AmTr_v1.0_scaffold00013.132 0.8150243304070354 79 AMTR_s00002p00271640 evm_27.TU.AmTr_v1.0_scaffold00002.634 0.8140213368363484 58 AMTR_s00067p00125030 PMP, evm_27.TU.AmTr_v1.0_scaffold00067.105 0.81339893347623 60 AMTR_s00018p00211530 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN10 regulatory component RPN10, MCB1, ATMCB1, MBP1, evm_27.TU.AmTr_v1.0_scaffold00018.131 0.8119845317782776 76 AMTR_s00101p00161760 Protein degradation.peptidase families.serine-type peptidase activities.Rhomboid protease evm_27.TU.AmTr_v1.0_scaffold00101.137 0.8114785705864954 62 AMTR_s00069p00104060 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN1 component ATSK31, ATFUS6, SK31, CSN1, EMB78, FUS6, COP11, evm_27.TU.AmTr_v1.0_scaffold00069.66 0.8100735694567266 64 AMTR_s00004p00061310 evm_27.TU.AmTr_v1.0_scaffold00004.43 0.8099854078995757 65 AMTR_s00095p00059370 RNA biosynthesis.transcriptional activation.bZIP superfamily.TGA transcription factor activity.TGA transcription factor TGA2, AHBP-1B, evm_27.TU.AmTr_v1.0_scaffold00095.34 0.8092817894303999 75 AMTR_s00038p00055100 14-3-3-like protein OS=Lilium longiflorum GF14 NU, GRF7, evm_27.TU.AmTr_v1.0_scaffold00038.20 0.808815127554275 67 AMTR_s00049p00097260 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase G6PD6, evm_27.TU.AmTr_v1.0_scaffold00049.68 0.8080918292441133 69 AMTR_s00006p00266790 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.UAfT nucleotide sugar transporter evm_27.TU.AmTr_v1.0_scaffold00006.292 0.8078812981435981 70 AMTR_s00142p00049490 Nutrient uptake.phosphorus assimilation.phosphate signalling.PHR1 transcription factor evm_27.TU.AmTr_v1.0_scaffold00142.28 0.8067017198702683 71 AMTR_s00033p00228810 evm_27.TU.AmTr_v1.0_scaffold00033.219 0.8047116514755492 74 AMTR_s00079p00145040 RNA biosynthesis.RNA polymerase II-dependent transcription.ELONGATOR transcription elongation complex.ELP5 component evm_27.TU.AmTr_v1.0_scaffold00079.62 0.8046319992202366 92 AMTR_s00057p00073380 Protein disulfide isomerase-like 2-2 OS=Oryza sativa subsp. japonica MEE30, ATPDI11, PDI11, ATPDIL2-1, UNE5, evm_27.TU.AmTr_v1.0_scaffold00057.44 0.8045048414888211 82 AMTR_s00037p00018100 Protein biosynthesis.translation elongation.hypusination of eEF5.deoxyhypusine hydroxylase evm_27.TU.AmTr_v1.0_scaffold00037.5 0.8032848869349508 77 AMTR_s00141p00108250 Protein modification.protein folding and quality control.N-glycan-dependent machinery.MNS alpha-1,2 mannosidase MNS3, evm_27.TU.AmTr_v1.0_scaffold00141.41 0.8032656874691129 78 AMTR_s00095p00133680 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ligase complexes.CUL3 scaffold component CUL3B, ATCUL3B, evm_27.TU.AmTr_v1.0_scaffold00095.95 0.8029544978396143 79 AMTR_s00069p00028020 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.5-enolpyruvyl-shikimate 3-phosphate (EPSP) synthase evm_27.TU.AmTr_v1.0_scaffold00069.12 0.8002458004193187 82 AMTR_s00049p00051200 evm_27.TU.AmTr_v1.0_scaffold00049.24 0.8002153431880933 84 AMTR_s00038p00188490 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade F phosphatase PAPP2C, evm_27.TU.AmTr_v1.0_scaffold00038.131 0.8000923980795943 85 AMTR_s00002p00177010 evm_27.TU.AmTr_v1.0_scaffold00002.151 0.8000477159425915 86 AMTR_s00055p00080730 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate synthase evm_27.TU.AmTr_v1.0_scaffold00055.30 0.7992845848806353 87 AMTR_s00017p00252560 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qc-type SNARE components.SYP7 group protein ATSYP71, SYP71, evm_27.TU.AmTr_v1.0_scaffold00017.259 0.7979836912956529 90 AMTR_s00099p00109140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor WHY2, ATWHY2, evm_27.TU.AmTr_v1.0_scaffold00099.92 0.7974029245825957 92 AMTR_s00001p00026840 Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana DSK2, evm_27.TU.AmTr_v1.0_scaffold00001.11 0.7957266913030454 96 AMTR_s00002p00195630 RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana PEP, evm_27.TU.AmTr_v1.0_scaffold00002.178 0.7956929362509465 97 AMTR_s00061p00090590 Transmembrane 9 superfamily member 12 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.68 0.7956921376536268 98 AMTR_s00062p00161920 Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana ATRBP45A, RBP45A, evm_27.TU.AmTr_v1.0_scaffold00062.151 0.7951865478127342 99 AMTR_s00090p00122120 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.fumarylacetoacetate hydrolase evm_27.TU.AmTr_v1.0_scaffold00090.61 0.7941153371732829 100