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  5. AMTR_s00078p00029420

AMTR_s00078p00029420 (YAB5,...)


Aliases : YAB5, evm_27.TU.AmTr_v1.0_scaffold00078.9

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.YABBY transcription factor


Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00029420

Target Alias Description ECC score Gene Family Method Actions
AT1G08465 YAB2 Plant-specific transcription factor YABBY family protein 0.05 OrthoFinder output from all 47 species
AT1G69180 CRC Plant-specific transcription factor YABBY family protein 0.04 OrthoFinder output from all 47 species
AT2G26580 YAB5 plant-specific transcription factor YABBY family protein 0.04 OrthoFinder output from all 47 species
AT2G45190 AFO, YAB1, FIL Plant-specific transcription factor YABBY family protein 0.02 OrthoFinder output from all 47 species
LOC_Os02g42950.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.05 OrthoFinder output from all 47 species
LOC_Os04g45330.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
LOC_Os07g06620.2 YAB2, LOC_Os07g06620 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
LOC_Os10g36420.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Solyc01g010240.3.1 CRC, Solyc01g010240 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Solyc06g073920.3.1 YAB2, Solyc06g073920 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e003268_P003 AFO, YAB1, FIL,... transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e015245_P002 AFO, YAB1, FIL,... transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e017951_P002 YAB5, Zm00001e017951 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e032845_P002 YAB2, Zm00001e032845 transcription factor (YABBY) 0.05 OrthoFinder output from all 47 species
Zm00001e038717_P002 CRC, Zm00001e038717 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006780 YABBY 16 193
No external refs found!